Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e13
(285 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81553-10|CAB04501.2| 668|Caenorhabditis elegans Hypothetical p... 29 0.54
Z81553-9|CAB04500.2| 663|Caenorhabditis elegans Hypothetical pr... 29 0.54
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 1.2
AF016665-2|AAC71181.1| 662|Caenorhabditis elegans Hypothetical ... 28 1.2
Z82055-10|CAB04848.2| 659|Caenorhabditis elegans Hypothetical p... 27 2.9
AL032639-9|CAA21633.1| 303|Caenorhabditis elegans Hypothetical ... 26 3.8
Z83238-2|CAB05793.1| 343|Caenorhabditis elegans Hypothetical pr... 26 5.0
Z92782-4|CAB07186.1| 367|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z81568-2|CAB04590.1| 276|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr... 25 8.7
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 25 8.7
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 25 8.7
CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical ... 25 8.7
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 25 8.7
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 25 8.7
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 25 8.7
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 25 8.7
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 25 8.7
>Z81553-10|CAB04501.2| 668|Caenorhabditis elegans Hypothetical
protein F56H6.12 protein.
Length = 668
Score = 29.1 bits (62), Expect = 0.54
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 208 SAAERLVFSSYRPNEEQEDNYVLYS-CLDSFT 116
SA LVF S RP EQED + + S +D FT
Sbjct: 103 SANRALVFMSNRPKTEQEDYFQMLSIAIDIFT 134
>Z81553-9|CAB04500.2| 663|Caenorhabditis elegans Hypothetical
protein F56H6.11 protein.
Length = 663
Score = 29.1 bits (62), Expect = 0.54
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 208 SAAERLVFSSYRPNEEQEDNYVLYS-CLDSFT 116
SA LVF S RP EQED + + S +D FT
Sbjct: 103 SANRALVFMSNRPKTEQEDYFQMLSIAIDIFT 134
>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = -3
Query: 217 LGSSAAERLVFSS----YRPNEEQEDNYVLYSCLD 125
+GS+ E++ F S Y + +E N VLY CLD
Sbjct: 111 VGSNYVEKIFFRSIYHGYSGEQNEEMNMVLYGCLD 145
>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = -3
Query: 217 LGSSAAERLVFSS----YRPNEEQEDNYVLYSCLD 125
+GS+ E++ F S Y + +E N VLY CLD
Sbjct: 111 VGSNYVEKIFFRSIYHGYSGEQNEEMNMVLYGCLD 145
>AF016665-2|AAC71181.1| 662|Caenorhabditis elegans Hypothetical
protein C49D10.8 protein.
Length = 662
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 208 SAAERLVFSSYRPNEEQEDNY-VLYSCLDSFT 116
SA L+F S RP QED + +L+S +D FT
Sbjct: 108 SAMGALLFVSNRPKTAQEDYFQMLFSAVDIFT 139
>Z82055-10|CAB04848.2| 659|Caenorhabditis elegans Hypothetical
protein T26H2.7 protein.
Length = 659
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 208 SAAERLVFSSYRPNEEQEDNYVLYSC-LDSFT 116
SA++ L+F S RP +ED + + S +D FT
Sbjct: 107 SASQALIFMSNRPKTAEEDYFQMLSIGIDIFT 138
>AL032639-9|CAA21633.1| 303|Caenorhabditis elegans Hypothetical
protein Y38F1A.8 protein.
Length = 303
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -1
Query: 249 MFFIATFRQLNLVAAQQSGWFSAV 178
+FF+ +R+L L++A +S W++ V
Sbjct: 118 LFFLMLYRRLFLISAPKSVWYARV 141
>Z83238-2|CAB05793.1| 343|Caenorhabditis elegans Hypothetical
protein T08G3.2 protein.
Length = 343
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 20 QQLYKEIIVFYVCHLNY*A*RSAYLWIC 103
Q +Y+ I VFY HL Y +W+C
Sbjct: 110 QFVYRYIAVFYPIHLKYFDKWYLLIWVC 137
>Z92782-4|CAB07186.1| 367|Caenorhabditis elegans Hypothetical
protein F14F8.5 protein.
Length = 367
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 264 LNRLPMFFIATFRQLNLVAAQQSGWF 187
L+ L M+FI F L ++ S WF
Sbjct: 101 LSYLEMYFIQLFNSLEIILTDLSVWF 126
>Z81568-2|CAB04590.1| 276|Caenorhabditis elegans Hypothetical
protein K08E3.2 protein.
Length = 276
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 256 AANVFYCNLPAAKLGSSAAERLVFSSYRPNEEQEDNYVL 140
+ NV++ N K+ + + + +RP+E+QED V+
Sbjct: 206 SVNVYFINPVFGKIDPMSTAEVTIT-HRPSEKQEDKLVI 243
>Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical
protein F20G4.1 protein.
Length = 1615
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 185 ENQPLCCAATKFSCRKVAIKNIGSRFSVYQL 277
E+ P C A C +VA+ + + +YQ+
Sbjct: 54 ESLPFCKLAVSPKCDRVAVMSYARQLDIYQI 84
>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
protein W08D2.5 protein.
Length = 1256
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 211 SSAAERLVFSSYRPNEEQEDNYVLYS 134
SS+ +R+ + P E++ DN +LYS
Sbjct: 599 SSSLQRMSVIVFDPREDRPDNMMLYS 624
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 190 VFSSYRPNEEQEDNYVLYSCLDS 122
VF+ Y E+ YVLY C+DS
Sbjct: 286 VFTVYLAASEEGWVYVLYDCMDS 308
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 211 SSAAERLVFSSYRPNEEQEDNY-VLYSCLDSFT 116
SSA + L+F S RP+ +ED + L +D FT
Sbjct: 107 SSATKALLFVSNRPHTGEEDYFEKLLIAIDLFT 139
>CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical
protein K09E10.1 protein.
Length = 692
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 211 SSAAERLVFSSYRPNEEQEDNY-VLYSCLDSFT 116
SSA + L+F S RP+ +ED + L +D FT
Sbjct: 105 SSATKALLFVSNRPHTGEEDYFEKLLIAIDLFT 137
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 190 VFSSYRPNEEQEDNYVLYSCLDS 122
VF+ Y E+ YVLY C+DS
Sbjct: 286 VFTVYLAASEEGWVYVLYDCMDS 308
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 190 VFSSYRPNEEQEDNYVLYSCLDS 122
VF+ Y E+ YVLY C+DS
Sbjct: 344 VFTVYLAASEEGWVYVLYDCMDS 366
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 190 VFSSYRPNEEQEDNYVLYSCLDS 122
VF+ Y E+ YVLY C+DS
Sbjct: 344 VFTVYLAASEEGWVYVLYDCMDS 366
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 190 VFSSYRPNEEQEDNYVLYSCLDS 122
VF+ Y E+ YVLY C+DS
Sbjct: 344 VFTVYLAASEEGWVYVLYDCMDS 366
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 190 VFSSYRPNEEQEDNYVLYSCLDS 122
VF+ Y E+ YVLY C+DS
Sbjct: 316 VFTVYLAASEEGWVYVLYDCMDS 338
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,706,720
Number of Sequences: 27780
Number of extensions: 97235
Number of successful extensions: 246
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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