Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e13
         (285 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   0.97 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   3.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   6.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   6.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   9.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 0.97
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 216 SLAAGRLQ*KTLAAGSVCISS 278
           SL AG  + KTL +G VC+ S
Sbjct: 29  SLHAGNAE-KTLCSGQVCLGS 48


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 188 NQPLCCAATKFSCRKVA 238
           N+ + C+A KF C K +
Sbjct: 88  NKCIGCSAEKFECSKTS 104


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 248 IGSRFSVYQ 274
           IG+RF+VYQ
Sbjct: 445 IGARFAVYQ 453


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +1

Query: 247 HWQPVQCVSALL 282
           HW  ++CV A++
Sbjct: 306 HWTVMRCVQAMI 317


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 71  NNSDDKRKKQ*FLYIVVVLN 12
           NN  DK +K+  LY+  VL+
Sbjct: 70  NNQADKSEKRIPLYVCRVLH 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,256
Number of Sequences: 438
Number of extensions: 1402
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)