Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e11
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    60   4e-10
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    39   7e-04
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    26   4.2  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    26   5.5  
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    25   7.3  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    25   7.3  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   9.6  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   9.6  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   9.6  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
 Frame = -2

Query: 599 FLSTVIFAMEGIGVVMPVENTMKKPQHFLGCPSVLVVAMSTIMLMYSILGLFGYFRYGDV 420
           F+   IF  EGI +++P++  M KP++    P +L   M+ I L++  +GL  Y  +G  
Sbjct: 460 FIGVAIFTYEGICLILPIQEQMAKPKNL---PKLLTGVMAAISLLFISIGLLSYAAFGSK 516

Query: 419 LRGSITLNLPIDDWPAVCAKTFIALSIFFTYPLHFFVVL-----DIFTRYAEPHIKKEYR 255
           ++  + LN+P   +  V  +   A++I  + PL  F  +      IFTR  + + K ++R
Sbjct: 517 VKTVVILNMPESTF-TVIIQFLYAIAILLSTPLQLFPAIAIIEQGIFTRSGKRNRKIKWR 575

Query: 254 -NFAQIL 237
            N+ ++L
Sbjct: 576 KNYLRVL 582


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 1/176 (0%)
 Frame = -2

Query: 623 GDLSRLPAFLSTVIFAMEGIGVVMPVENTMKKPQHFLGCPSVLVVAMSTIMLMYSILGLF 444
           G LS LP F+           V+  V N     Q F+       +  ST  L+Y ++ + 
Sbjct: 204 GYLSVLPVFVFGFTCHQNAFSVINEVRNFS---QGFVNFTMFTAIISST--LLYLLVAIT 258

Query: 443 GYFRYGDVLRGSITLNLPIDDWPAVCAKTFIALSIFFTYPLHFFVVLD-IFTRYAEPHIK 267
           GY  +G +  G+I           +  K  I + + F+YPL      + ++      +  
Sbjct: 259 GYLSFGSLASGNIIAMYDNTSIWIIGGKLAIVVLVLFSYPLQCHPCRNSVYQAIRRSYSA 318

Query: 266 KEYRNFAQILARTSCVWICGGIGIALPMLEQIINIVGALFYSILGLIIPGVIETVF 99
            +  +    +     +     + + L  LE ++  VG+   + +  I+PG +   F
Sbjct: 319 HDMSDGYHAVITLCILLFTHSLALLLSSLEMVLAFVGSTGSTFISFILPGSLYYFF 374


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 212 CGG-IGIALPMLEQIINIVGALFYSILGLIIPGVIETVFRWEDLGRWNWIFWKNLLI 45
           CGG +      +++   + G   +  LG I   +I        LG W W+FW N+++
Sbjct: 209 CGGTLSDLFTPIQRTYVLPGFCTFPFLGPIFGPIIGDFICQSYLG-WCWVFWINMIM 264


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 243 NTRQDLLRLDLWWNRHSIAYA 181
           +T Q    LDLW  RHS+ Y+
Sbjct: 210 DTAQSWYTLDLWQGRHSLLYS 230


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 578 AMEGIGVVMPVE---NTMKKPQHFLGCPSVLVVAMSTIMLMYSIL 453
           A++ +G+++  E     MK PQ    C   L V  +T +LMY +L
Sbjct: 201 AIKNLGILLKKEFRVRHMKTPQQINDCDCGLHVCENTRILMYRLL 245


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 495 RRSYVNYHAHVFYSWLIR 442
           R S VNYH HV Y   +R
Sbjct: 112 RVSIVNYHGHVVYDTYVR 129


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 503 SVLVVAMSTIMLMYSILGLFGYFRYGDVLRGSITL 399
           SVL V + T +L +  LG  G   YG  LR ++ +
Sbjct: 238 SVLNVVLGTSLLWFGWLGFNGGSAYGSNLRAAMAI 272


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = +1

Query: 553 ITTPMPSIANITV-----DKKAGSLDRSP*DSFISKIN 651
           IT P+PS ANI+      D  AGS D    +  I+K N
Sbjct: 204 ITEPVPSFANISTQDFNSDSAAGSSDSEEDEEEIAKKN 241


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 1   LTVQPDTKEQTPKRTINRFFQKIQFHLPRSSHLNTVSITPGIMSPS 138
           L V+ +  E + K   N+F   I  HL  + H+ TV+    +++ S
Sbjct: 324 LAVEKNCIEGSLKYLENQFLSLIDLHLSDAGHITTVNSVEKVIAYS 369


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 37  KRTINRFFQKIQFHLPRSSHLNTVSITPGIM 129
           K   N  FQKI F  P  SH +  +  P ++
Sbjct: 201 KSDSNLSFQKIPFTSPNQSHTSLANYNPDLL 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,603
Number of Sequences: 5004
Number of extensions: 65052
Number of successful extensions: 194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)