Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e11
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   1.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.9  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   7.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 469 SMIVDIATTRTLGHPRKCCGFFIVFSTGIT 558
           S   DI  +++L H  +CC  F +  +G T
Sbjct: 793 SFHTDIGNSQSLAHQDQCCPGFTMTKSGKT 822


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 103 YLDGKIWADGIGFFGKIY 50
           +LD  +WADG+  F +++
Sbjct: 36  FLDNSVWADGLLVFYEVF 53


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 205 PPQIQTQEVLASICAKLRY 261
           PPQ+ T+E + ++C  L +
Sbjct: 454 PPQLPTEESVDALCNTLHH 472


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 465 VFYSWLIRLLQIRR 424
           VF +W+ RLL +RR
Sbjct: 353 VFLNWMPRLLMMRR 366


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 178 SSIGNAMPIPPQIQ 219
           S I  A PIPP+IQ
Sbjct: 101 SHIPTAPPIPPEIQ 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,797
Number of Sequences: 438
Number of extensions: 4411
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)