Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e10
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0422 + 33818887-33819996                                         31   0.95 
01_05_0490 + 22672241-22674679                                         31   1.3  
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    28   6.7  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   6.7  
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101...    28   8.8  

>03_06_0422 + 33818887-33819996
          Length = 369

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +1

Query: 421 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 591
           E   ++ER  + E+T SL    + N   E ++L+G       D+  +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 665 RPHRSLRTXTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 522
           +P + + T T  P  L    R+W   + E+VLEQ S    + MP  PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342


>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 412 NSLESEEQQERHHKTEQTHSLRQ 480
           NS+   E QE+ H  E+TH LRQ
Sbjct: 62  NSIFYSESQEQKHVKEETHRLRQ 84


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/69 (21%), Positives = 28/69 (40%)
 Frame = +1

Query: 373 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDE 552
           L C + +   +   +  ++       +T   +   Q  T NG  E L   GG   ++ + 
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390

Query: 553 GAEDCSNTS 579
           GAE  S+ +
Sbjct: 391 GAESVSSNA 399


>10_01_0078 -
           1012031-1012084,1012998-1013105,1013610-1013661,
           1013926-1016603
          Length = 963

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 250 NCIPVDAHCRCNTHQSLHHYEGEVSKHSI-PWLSTPDSIH*NLICRM 387
           N I V A+C+    +S  H  GE++K  I P ++  DSI    +CRM
Sbjct: 471 NSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSII-VCLCRM 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,456,016
Number of Sequences: 37544
Number of extensions: 387068
Number of successful extensions: 1072
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)