Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e10
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    75   7e-14
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    75   7e-14
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    75   7e-14
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    29   4.5  
AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    28   6.0  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = -1

Query: 681 AVRSFQTTSVTKDXDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFS 502
           A R   TT   KD DSAAK+                   VFG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 501 YAILGFALSE 472
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = -1

Query: 681 AVRSFQTTSVTKDXDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFS 502
           A R   TT   KD DSAAK+                   VFG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 501 YAILGFALSE 472
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = -1

Query: 681 AVRSFQTTSVTKDXDSAAKFXXXXXXXXXXXXXXXXXXXVFGSLIIGYARNPSLKQQLFS 502
           A R   TT   KD DSAAK+                   VFG+L+IGYARNPSLKQQLFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 501 YAILGFALSE 472
           YAILGFALSE
Sbjct: 90  YAILGFALSE 99


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 384 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 298
           P + VSVY I    PWN +F    ++V Q
Sbjct: 29  PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57


>AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical
           protein F28A10.1 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 428 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 556
           KSSR  I  ++  I     KP    E N C+ + FLA PM  E
Sbjct: 21  KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63


>Z72502-3|CAA96593.2|  218|Caenorhabditis elegans Hypothetical
           protein C08B6.6 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 259 PVDAHCRCNTHQSLHHYEGEV 321
           P+   CRCNT  +LH  EG V
Sbjct: 98  PIYVLCRCNTTNTLHRREGVV 118


>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
           protein T23H2.3 protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
 Frame = +1

Query: 394 VVFLKVNSLESEEQQERHHKT---EQTHSLRQGETQNGV*EQLLLEGGVPGIADD----- 549
           V+    +S E E+++ERH  +   ++T S+R   T +    + +++  +  +A       
Sbjct: 9   VIIDSSDSSEDEDRKERHSSSSEVDETASMRS--TDSSEPPRTIIDASLNSMASTVYTST 66

Query: 550 -EGAEDCSNTSSGTSYSHCRCTSTNEFGSR 636
               +  S T S T+Y   +C++ + + SR
Sbjct: 67  PNSKQSISRTGSSTTYGSSKCSTDDHYRSR 96


>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 565 CSNTSSGTSYSHCRCTSTNEFGSRVXVLSDRCGLEGPHCRELC 693
           C NT   TS S+C C   +   S    +     L  P C++ C
Sbjct: 51  CHNTQQSTSASNCNCVLKSNSKSVPVTIKVSTKLCAPACQQSC 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,835,735
Number of Sequences: 27780
Number of extensions: 343311
Number of successful extensions: 1065
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)