Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e09
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 195 4e-51
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 55 1e-08
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.37
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 28 1.5
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 27 2.0
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 27 2.6
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.4
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 6.0
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 7.9
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 195 bits (476), Expect = 4e-51
Identities = 93/149 (62%), Positives = 111/149 (74%)
Frame = -3
Query: 696 MLAHKAEDEGIVCVEGIKGMPVHFNYDAIPSVIYTSPEVGWVGKTEEDLKKEGRAYKVGK 517
MLAHKAEDEGI VE I H NY+ IP+V+YT PEV WVG TE+ K+ G Y++G
Sbjct: 363 MLAHKAEDEGIAAVEYIAKGQGHVNYNCIPAVMYTHPEVAWVGITEQKAKESGIKYRIGT 422
Query: 516 FPFLANSRAKTNGETEGFVKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDV 337
FPF ANSRAKTN + +G VKV+ D TD +LG H+IGP GELI EA LA EYGA+AEDV
Sbjct: 423 FPFSANSRAKTNMDADGLVKVIVDAETDRLLGVHMIGPMAGELIGEATLALEYGASAEDV 482
Query: 336 ARVCHAHPTCAEALREANLAAYSGKPINF 250
ARVCHAHPT +EA +EA +AA+ GK I+F
Sbjct: 483 ARVCHAHPTLSEATKEAMMAAWCGKSIHF 511
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 54.8 bits (126), Expect = 1e-08
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Frame = -3
Query: 651 GIKGMPVHFNYDAIPSVIYTSPEVGWVGKTEED-LKKEGRA-YKV--GKFPFLANSRAKT 484
GIK H +Y+ +PSV++ PE G +G TE++ + K G + KV KF L S +
Sbjct: 340 GIKD--AHLDYEEVPSVVFAHPEAGTIGLTEQEAIDKYGESQIKVYNTKFNGLNYSMVEQ 397
Query: 483 NGETEGFVKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCA 304
+ K++ ++G H++G E++ +A + GA D HPT A
Sbjct: 398 EDKVPTTYKLVCAGPLQKVVGLHLVGDFSAEILQGFGVAIKMGATKSDFDSCVAIHPTSA 457
Query: 303 EAL 295
E L
Sbjct: 458 EEL 460
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 29.9 bits (64), Expect = 0.37
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = -3
Query: 618 DAIPSVIY-TSPE----VGWVGKTEEDLKKEGR-AYKVGKFPFLANSRAKTNGETEGFVK 457
DA P+++ T P V WV KT + G + K PF A+SRA + T
Sbjct: 85 DAFPTLLSKTGPSKPRIVSWVRKTASNTSVAGSDSVSRDKIPFSASSRASSTKST----- 139
Query: 456 VLSDKTTDVILGTHIIGP 403
+ S K TD + T I+ P
Sbjct: 140 LSSVKETDFVTETLILSP 157
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -2
Query: 307 CRSAT*SKSSSVLRKTNQLLNVEVLII 227
C SA SKSS +L KT Q L+ VLII
Sbjct: 1262 CTSALDSKSSLLLEKTIQNLSCTVLII 1288
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 689 LTKRRTKVSSAWKVLRVCPSTSTTMQFRRLF 597
+T+R+ +S W +L PST QF+R +
Sbjct: 300 ITRRKNTLSDFWTLLHSLPSTLLWPQFKRKY 330
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 509 NGNLPTL*ALPSFFKSSSVFPT 574
NGN PTL SFF S+SV PT
Sbjct: 289 NGNSPTLKNDSSFFGSASVRPT 310
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 301 FGTCRMRVTDSRNVFSSGTILLREYSLVDQLTTARANNVSPKDY 432
+G C + +S N+FS I+ +VD ++ R+NN+SPK Y
Sbjct: 347 YGICDW-IPNSSNMFSM--IVKNSLYIVD-ISNIRSNNISPKVY 386
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 370 EYSLVDQLTTARANNVSPKDYVCSLIGKHFDETFSFPIRFRSGVRQERE 516
+YS ++ A ++ KD + S++G+ F E FR+ ++ + E
Sbjct: 1032 QYSEAIRIARATGDSSIYKDLLISVLGESFGEASELVADFRNQIKSQTE 1080
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 346 SSGTILLREYSLVDQLTTA-RANNVSPKDYVCSLIGKHFDET 468
+S L SLV +A R++++S Y +L+GK DE+
Sbjct: 205 TSSKSLASNTSLVQSFNSASRSSSISGNQYTYNLLGKSTDES 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,129
Number of Sequences: 5004
Number of extensions: 55484
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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