Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e09
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571 190 7e-49
01_03_0111 - 12638078-12639328,12640886-12641146 189 2e-48
01_03_0153 + 13255667-13255954,13258383-13258529,13258798-132589... 96 3e-20
05_01_0413 - 3253345-3253461,3253595-3253666,3253763-3253876,325... 95 4e-20
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 56 4e-08
10_08_0003 - 13992276-13992311,13992461-13992598,13992682-139928... 54 1e-07
02_05_1191 + 34856635-34856775,34856878-34856942,34857096-348571... 50 2e-06
03_05_0579 + 25808541-25808628,25808761-25808834,25809204-25809350 43 3e-04
06_03_0588 + 22567820-22570802,22570917-22571269 32 0.50
05_01_0429 + 3399266-3399708,3401320-3401382,3403919-3404345,340... 31 0.67
01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225... 31 0.88
01_01_0217 + 1848970-1849251,1849419-1849566,1849638-1849789,185... 31 1.2
10_06_0167 + 11401984-11402023,11402024-11402293,11402499-114026... 30 1.5
04_04_1095 - 30839573-30839769,30839817-30839964,30840421-308409... 30 1.5
06_02_0080 + 11518393-11518398,11520318-11520401,11520846-115209... 29 3.5
01_05_0624 + 23772613-23774671,23774737-23775596 29 4.7
11_06_0126 - 20378611-20379719,20380081-20381239 28 6.2
12_01_0843 + 7891622-7892524 28 8.2
05_05_0001 + 21410408-21411391 28 8.2
>05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571
Length = 527
Score = 190 bits (464), Expect = 7e-49
Identities = 87/142 (61%), Positives = 108/142 (76%)
Frame = -3
Query: 696 MLAHKAEDEGIVCVEGIKGMPVHFNYDAIPSVIYTSPEVGWVGKTEEDLKKEGRAYKVGK 517
MLAHKAE++G+ CVE I G H +YD +P V+YT PEV VGKTEE +K G AY+VGK
Sbjct: 380 MLAHKAEEDGVACVEFIAGKEGHVDYDTVPGVVYTHPEVASVGKTEEQVKASGVAYQVGK 439
Query: 516 FPFLANSRAKTNGETEGFVKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDV 337
FP LANSRAK + EG VKV+++K TD ILG HI+ P GE+I+EAVLA +YGA++ED+
Sbjct: 440 FPLLANSRAKAIDDAEGLVKVVAEKETDRILGVHIMAPNAGEIIHEAVLALQYGASSEDI 499
Query: 336 ARVCHAHPTCAEALREANLAAY 271
AR CHAHPT +EAL+EA L Y
Sbjct: 500 ARTCHAHPTVSEALKEACLQTY 521
>01_03_0111 - 12638078-12639328,12640886-12641146
Length = 503
Score = 189 bits (461), Expect = 2e-48
Identities = 86/143 (60%), Positives = 109/143 (76%)
Frame = -3
Query: 696 MLAHKAEDEGIVCVEGIKGMPVHFNYDAIPSVIYTSPEVGWVGKTEEDLKKEGRAYKVGK 517
MLAHKAE++G+ CVE I G H +YD +P V+YT PEV VGKTEE +K G Y+VGK
Sbjct: 356 MLAHKAEEDGVACVEFIAGKEGHVDYDTVPGVVYTHPEVASVGKTEEQVKALGIPYRVGK 415
Query: 516 FPFLANSRAKTNGETEGFVKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDV 337
FP LANSRAK + EG VKV+++K TD ILG HI+ PG GE+I+EAVLA +YGA++ED+
Sbjct: 416 FPLLANSRAKAIDDAEGLVKVVAEKETDKILGVHIMAPGAGEIIHEAVLALQYGASSEDI 475
Query: 336 ARVCHAHPTCAEALREANLAAYS 268
AR CHAHPT +EAL+EA L ++
Sbjct: 476 ARTCHAHPTVSEALKEACLQTFT 498
>01_03_0153 +
13255667-13255954,13258383-13258529,13258798-13258932,
13259344-13259461,13260925-13261049,13261407-13261532,
13261617-13261697,13262188-13262250,13262328-13262402,
13263439-13263517,13263627-13263727,13263952-13264065,
13264225-13264338,13264406-13264477,13264561-13264608
Length = 561
Score = 95.9 bits (228), Expect = 3e-20
Identities = 58/145 (40%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Frame = -3
Query: 696 MLAHKAEDEGIVCVEGIKGMPVHFNYDAIPSVIYTSPEVGWVGKTE----EDLKKEGRAY 529
MLAH A +GI VE I G N+ +IP+ +T PE+ VG TE E KEG
Sbjct: 401 MLAHAASAQGISVVERISGKDNILNHLSIPAACFTHPEISMVGLTEPQAREKADKEGFEI 460
Query: 528 KVGKFPFLANSRAKTNGETEGFVKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAA 349
V K F AN++A E +G K++ T ILG HI+G +LI+EA A G
Sbjct: 461 SVVKTSFKANTKALAENEGDGLAKMIYRPDTGEILGVHILGLHAADLIHEASNAIALGTR 520
Query: 348 AEDVARVCHAHPTCAEALREANLAA 274
+D+ HAHPT +E L E AA
Sbjct: 521 VQDIKFAVHAHPTLSEVLDELFKAA 545
>05_01_0413 -
3253345-3253461,3253595-3253666,3253763-3253876,
3254050-3254163,3254420-3254520,3254616-3254694,
3254789-3254863,3254955-3255017,3255281-3255361,
3255449-3255574,3255898-3256022,3256722-3256839,
3257420-3257554,3258029-3258175,3259016-3259321
Length = 590
Score = 95.5 bits (227), Expect = 4e-20
Identities = 58/145 (40%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Frame = -3
Query: 696 MLAHKAEDEGIVCVEGIKGMPVHFNYDAIPSVIYTSPEVGWVGKTE----EDLKKEGRAY 529
MLAH A +GI VE I G N+ +IP+ +T PE+ VG TE E KEG
Sbjct: 407 MLAHAASAQGISVVEQISGRDHILNHLSIPAACFTHPEISMVGLTEPQAREKADKEGFEI 466
Query: 528 KVGKFPFLANSRAKTNGETEGFVKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAA 349
V K F AN++A E +G K++ T ILG HI+G +LI+EA A G
Sbjct: 467 SVVKTSFKANTKALAENEGDGLAKLIYRPDTGEILGVHILGLHAADLIHEASNAIALGTR 526
Query: 348 AEDVARVCHAHPTCAEALREANLAA 274
+D+ HAHPT +E L E AA
Sbjct: 527 LQDIKFAVHAHPTLSEVLDELFKAA 551
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 55.6 bits (128), Expect = 4e-08
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Frame = -3
Query: 636 PVHFNYDAIPSVIYTSPEVGWVGKTEEDLKKEGRAYKVGKFPFLANSRAKTNGETEG-FV 460
P +Y A+PS +++ P +G VG TEE +E + F RA +G + F+
Sbjct: 414 PTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDIYTANFRP-LRATLSGLPDRIFM 472
Query: 459 KVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAE 301
K++ TT+ ++G H+ G E+I +A + G +D HPT AE
Sbjct: 473 KLIVCATTNKVVGVHMCGEDAPEIIQGVAIAVKAGLTKQDFDATIGIHPTSAE 525
>10_08_0003 -
13992276-13992311,13992461-13992598,13992682-13992852,
13992926-13992989,13993404-13993552,13993700-13993753,
13993894-13994034,13994134-13994412,13994518-13994743,
13995328-13995734
Length = 554
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = -3
Query: 636 PVHFNYDAIPSVIYTSPEVGWVGKTEEDLKKEGRAYKVGKFPFLANSRAKTNGETEG-FV 460
P +Y A+PS +++ P +G VG TEE ++ V F RA +G + ++
Sbjct: 413 PTKPDYSAVPSAVFSQPPIGQVGLTEEKAIEKYGDVDVYTSNFRP-LRATLSGLPDRVYM 471
Query: 459 KVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEAL 295
KV+ T+ +LG H+ G E+I +A + G ++ HPT AE L
Sbjct: 472 KVIVCANTNKVLGVHVCGEDAPEIIQGIAIAVKAGLMKQNFDATIGVHPTTAEEL 526
>02_05_1191 +
34856635-34856775,34856878-34856942,34857096-34857165,
34857499-34857570,34857668-34857871,34858793-34858866,
34858965-34859048,34859582-34859669,34859763-34859844,
34860178-34860251,34860474-34860581,34860683-34860747,
34861317-34861430,34861644-34861743,34861840-34861893,
34861972-34862067
Length = 496
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Frame = -3
Query: 642 GMPVHFNYDAIPSVIYTSPEVGWVGKTEEDLKKEGRA---YKVGKFPFLANSRAKTNGET 472
G P +Y +P +++ P + VG +E+ +E ++ F + NS +K +T
Sbjct: 360 GQPTKPDYRDVPCAVFSIPPLSVVGLSEQQALEEAKSDVLVYTSSFNPMKNSISKRQEKT 419
Query: 471 EGFVKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAE 301
+K++ D TD +LG + GP E+I +A + GA HP+ AE
Sbjct: 420 --VMKLVVDSETDKVLGASMCGPDAPEIIQGMAVALKCGATKATFDSTVGIHPSAAE 474
>03_05_0579 + 25808541-25808628,25808761-25808834,25809204-25809350
Length = 102
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = -3
Query: 621 YDAIPSVIYTSPEVGWVGKTEEDLKKEGRAYKVGKFPFLANSRAKTNGETEGFVKVLSDK 442
Y + +V+ + +V GK EE +K G AY+VGK LA+ +K + E VKV+++K
Sbjct: 42 YIGLETVLSGTGQVASFGKIEEQVKASGVAYQVGKSSLLAHRCSKAIDDAEELVKVMAEK 101
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 68 VPSTLSNTLVIIYLSFIFKNVRGTIP 145
+PS+L N +IYLS I N+ GTIP
Sbjct: 285 IPSSLGNLSSLIYLSLIANNLVGTIP 310
>05_01_0429 +
3399266-3399708,3401320-3401382,3403919-3404345,
3404863-3405141
Length = 403
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 414 IIGPGGGELINEAVLAQEYGAAAEDVARVCHAH 316
++G GGG I ++ E GA A VA C AH
Sbjct: 28 VVGGGGGVTIATVDMSAERGAVARQVATACAAH 60
>01_01_0272 -
2249662-2249721,2250110-2250335,2250419-2250615,
2250707-2250955,2251047-2251176,2251473-2251564,
2251735-2251855,2251940-2252028,2252149-2252271,
2252379-2252506,2253039-2253147,2253701-2254000
Length = 607
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 576 WVGKTEEDLKKEGRAYKVGKFPFLANSRAKTNGETEGFVKVLSDKTTD 433
W KTE D +E K +F + + SR K+NG+ E SD + D
Sbjct: 518 WKPKTESDATEERNREKAKEFVYGSGSRKKSNGKHENSSDDDSDGSCD 565
>01_01_0217 +
1848970-1849251,1849419-1849566,1849638-1849789,
1850146-1850328,1850690-1850765,1850956-1851033,
1851584-1851669,1852680-1852753,1852920-1852965,
1853211-1853320,1853600-1853774,1854501-1854749
Length = 552
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 480 GETEGFVKVLSDKTTDVILGTHIIGPGGGELINEA 376
G T+G + VL T +I+G H +G G L N A
Sbjct: 336 GHTDGHMGVLHVNTNALIVGDHCVGQGSATLDNRA 370
>10_06_0167 +
11401984-11402023,11402024-11402293,11402499-11402632,
11402737-11403663
Length = 456
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 68 VPSTLSNTLVIIYLSFIFKNVRGTIP 145
+PS+LSN + L F N+RGTIP
Sbjct: 324 IPSSLSNLTFLSDLDLSFNNLRGTIP 349
>04_04_1095 -
30839573-30839769,30839817-30839964,30840421-30840903,
30841419-30841910,30842267-30842362
Length = 471
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 633 VHFNYDAIPSVIYTSPEVGWVGKTEEDLKKEGRAYKVGKFPFLANSRAKTNG 478
V F+ + IP++I S + + EED K Y V +PF A R++ G
Sbjct: 115 VQFDIEHIPALIPLSTTLSHGFRVEEDAVKLVEEYGVDAYPFGAKRRSELEG 166
>06_02_0080 +
11518393-11518398,11520318-11520401,11520846-11520974,
11521362-11521450,11521589-11521772,11522414-11522504,
11522816-11522970,11523190-11523282,11523473-11523565,
11523715-11523795,11523867-11524016,11524134-11524229,
11524489-11524566
Length = 442
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 391 LTTARANNVSPKDYVCSLIGKHFDETFSFPIRFRSGVRQE 510
L T NN+ P ++ SLIG ET SFP++F QE
Sbjct: 198 LDTEENNNLVP-GFLGSLIGIRPGETRSFPLQFPESFEQE 236
>01_05_0624 + 23772613-23774671,23774737-23775596
Length = 972
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 68 VPSTLSNTLVIIYLSFIFKNVRGTIP 145
+PS+LSN + YL+ + N+ G IP
Sbjct: 833 IPSSLSNLTFLSYLNLSYNNLSGRIP 858
>11_06_0126 - 20378611-20379719,20380081-20381239
Length = 755
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 68 VPSTLSNTLVIIYLSFIFKNVRGTIP 145
+PSTLSN + L + N+ GTIP
Sbjct: 655 IPSTLSNLSYLSNLDLSYNNLSGTIP 680
>12_01_0843 + 7891622-7892524
Length = 300
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 362 SCASTASLINSPPPGPIM*VPRITSVVLSESTLTKPSVSP 481
S + S+ +SPPP P +P + L +T T P V+P
Sbjct: 104 SSSGMTSVESSPPPPPSAMLPLLPVRPLDTTTTTPPPVAP 143
>05_05_0001 + 21410408-21411391
Length = 327
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -3
Query: 408 GPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLA 277
GPG L+ E + +E+GAAA +AR CA+AL E N +
Sbjct: 221 GPGQDGLVGEPISTEEHGAAA--MAR-------CAQALGELNFS 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,372,469
Number of Sequences: 37544
Number of extensions: 346431
Number of successful extensions: 1000
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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