Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e09
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82277-3|CAB05249.2| 495|Caenorhabditis elegans Hypothetical pr... 241 3e-64
Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z11115-10|CAA77459.1| 503|Caenorhabditis elegans Hypothetical p... 48 6e-06
U61947-1|AAB03136.3| 667|Caenorhabditis elegans Thioredoxin red... 44 8e-05
AF162693-1|AAD46625.1| 525|Caenorhabditis elegans thioredoxin r... 44 8e-05
AF148217-1|AAD41826.1| 667|Caenorhabditis elegans thioredoxin r... 44 8e-05
U88165-4|AAR30207.1| 700|Caenorhabditis elegans Maternal effect... 29 3.2
U88165-3|AAK21393.1| 754|Caenorhabditis elegans Maternal effect... 29 3.2
U34812-1|AAB01719.1| 754|Caenorhabditis elegans MES-3 protein. 29 3.2
>Z82277-3|CAB05249.2| 495|Caenorhabditis elegans Hypothetical
protein LLC1.3 protein.
Length = 495
Score = 241 bits (590), Expect = 3e-64
Identities = 110/148 (74%), Positives = 124/148 (83%)
Frame = -3
Query: 696 MLAHKAEDEGIVCVEGIKGMPVHFNYDAIPSVIYTSPEVGWVGKTEEDLKKEGRAYKVGK 517
MLAHKAEDEGI+CVEGI G PVH +Y+ +PSV+YT PEV WVGK EE LK+EG AYK+GK
Sbjct: 346 MLAHKAEDEGILCVEGIAGGPVHIDYNCVPSVVYTHPEVAWVGKAEEQLKQEGVAYKIGK 405
Query: 516 FPFLANSRAKTNGETEGFVKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDV 337
FPF+ANSRAKTN + EGFVKVL+DK TD +LG HIIGP GE+I EA LA EYGA+AEDV
Sbjct: 406 FPFVANSRAKTNNDQEGFVKVLADKQTDRMLGVHIIGPNAGEMIAEATLAMEYGASAEDV 465
Query: 336 ARVCHAHPTCAEALREANLAAYSGKPIN 253
ARVCH HPT +EA REANLAAY GK IN
Sbjct: 466 ARVCHPHPTLSEAFREANLAAYCGKAIN 493
>Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical
protein C46F11.2b protein.
Length = 459
Score = 48.4 bits (110), Expect = 5e-06
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = -3
Query: 621 YDAIPSVIYTSPEVGWVGKTE-EDLKKEGR-AYKVGKFPFLANSRAKTNGETEGFVKVLS 448
Y+ I +V+++ P +G VG TE E ++K G+ + K F A T + + +K++
Sbjct: 339 YENIATVVFSHPLIGTVGLTEAEAVEKYGKDEVTLYKSRFNPMLFAVTKHKEKAAMKLVC 398
Query: 447 DKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEAL 295
+ ++G H+ G G E++ +A GA + + HPT AE L
Sbjct: 399 VGKDEKVVGVHVFGVGSDEMLQGFAVAVTMGATKKQFDQTVAIHPTSAEEL 449
>Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical
protein C46F11.2a protein.
Length = 473
Score = 48.4 bits (110), Expect = 5e-06
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = -3
Query: 621 YDAIPSVIYTSPEVGWVGKTE-EDLKKEGR-AYKVGKFPFLANSRAKTNGETEGFVKVLS 448
Y+ I +V+++ P +G VG TE E ++K G+ + K F A T + + +K++
Sbjct: 353 YENIATVVFSHPLIGTVGLTEAEAVEKYGKDEVTLYKSRFNPMLFAVTKHKEKAAMKLVC 412
Query: 447 DKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEAL 295
+ ++G H+ G G E++ +A GA + + HPT AE L
Sbjct: 413 VGKDEKVVGVHVFGVGSDEMLQGFAVAVTMGATKKQFDQTVAIHPTSAEEL 463
>Z11115-10|CAA77459.1| 503|Caenorhabditis elegans Hypothetical
protein ZK637.10 protein.
Length = 503
Score = 48.0 bits (109), Expect = 6e-06
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Frame = -3
Query: 621 YDAIPSVIYTSPEVGWVGKTEED-LKKEGR-AYKVGKFPFLANSRAKTNGETEGFVKVLS 448
+D + + ++T E+ VG TEE+ ++K G + +V F + GF V +
Sbjct: 370 FDGVATTVFTPLELSTVGLTEEEAIQKHGEDSIEVFHSHFTPFEYVVPQNKDSGFCYVKA 429
Query: 447 DKTTDV---ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLA 277
T D ILG H +GP E+I +A G + D+ HP +E + ++
Sbjct: 430 VCTRDESQKILGLHFVGPNAAEVIQGYAVAFRVGISMSDLQNTIAIHPCSSEEFVKLHIT 489
Query: 276 AYSGK 262
SG+
Sbjct: 490 KRSGQ 494
>U61947-1|AAB03136.3| 667|Caenorhabditis elegans Thioredoxin
reductase protein 1 protein.
Length = 667
Score = 44.4 bits (100), Expect = 8e-05
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Frame = -3
Query: 621 YDAIPSVIYTSPEVGWVGKTEED-LKKEGRAYKV---GKFPFLANSRAKTNGETEGFVKV 454
YD IP+ ++T E G G +EED + K G+ + F L + ++ + ++K+
Sbjct: 533 YDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISERMDKDHCYLKM 592
Query: 453 LSDKTTDV-ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLA 277
+ + + ++G HI+ P GE+ +A + A D R+ HPT AE L
Sbjct: 593 ICLRNEEEKVVGFHILTPNAGEVTQGFGIALKLAAKKADFDRLIGIHPTVAENFTTLTLE 652
Query: 276 AYSG 265
G
Sbjct: 653 KKEG 656
>AF162693-1|AAD46625.1| 525|Caenorhabditis elegans thioredoxin
reductase homolog protein.
Length = 525
Score = 44.4 bits (100), Expect = 8e-05
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Frame = -3
Query: 621 YDAIPSVIYTSPEVGWVGKTEED-LKKEGRAYKV---GKFPFLANSRAKTNGETEGFVKV 454
YD IP+ ++T E G G +EED + K G+ + F L + ++ + ++K+
Sbjct: 391 YDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISERMDKDHCYLKM 450
Query: 453 LSDKTTDV-ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLA 277
+ + + ++G HI+ P GE+ +A + A D R+ HPT AE L
Sbjct: 451 ICLRNEEEKVVGFHILTPNAGEVTQGFGIALKLAAKKADFDRLIGIHPTVAENFTTLTLE 510
Query: 276 AYSG 265
G
Sbjct: 511 KKEG 514
>AF148217-1|AAD41826.1| 667|Caenorhabditis elegans thioredoxin
reductase protein.
Length = 667
Score = 44.4 bits (100), Expect = 8e-05
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Frame = -3
Query: 621 YDAIPSVIYTSPEVGWVGKTEED-LKKEGRAYKV---GKFPFLANSRAKTNGETEGFVKV 454
YD IP+ ++T E G G +EED + K G+ + F L + ++ + ++K+
Sbjct: 533 YDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISERMDKDHCYLKM 592
Query: 453 LSDKTTDV-ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLA 277
+ + + ++G HI+ P GE+ +A + A D R+ HPT AE L
Sbjct: 593 ICLRNEEEKVVGFHILTPNAGEVTQGFGIALKLAAKKADFDRLIGIHPTVAENFTTLTLE 652
Query: 276 AYSG 265
G
Sbjct: 653 KKEG 656
>U88165-4|AAR30207.1| 700|Caenorhabditis elegans Maternal effect
sterile protein3, isoform b protein.
Length = 700
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -3
Query: 678 EDEGIVCVE-GIKGMPVHFNYDAIPSVIYTSPEVGWVGKTEEDLKKEGRAYKV----GKF 514
+++ + C+E GI +P+ +PS+ Y S V + T +LKK Y K
Sbjct: 190 DNDSVTCIENGISVIPMANR--TLPSISYNSSNVKNITLTGPELKKAKNVYLAVIVKRKT 247
Query: 513 PFLANSRAKTNGET 472
P L +R T G++
Sbjct: 248 PKLGENRVGTRGKS 261
>U88165-3|AAK21393.1| 754|Caenorhabditis elegans Maternal effect
sterile protein3, isoform a protein.
Length = 754
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -3
Query: 678 EDEGIVCVE-GIKGMPVHFNYDAIPSVIYTSPEVGWVGKTEEDLKKEGRAYKV----GKF 514
+++ + C+E GI +P+ +PS+ Y S V + T +LKK Y K
Sbjct: 190 DNDSVTCIENGISVIPMANR--TLPSISYNSSNVKNITLTGPELKKAKNVYLAVIVKRKT 247
Query: 513 PFLANSRAKTNGET 472
P L +R T G++
Sbjct: 248 PKLGENRVGTRGKS 261
>U34812-1|AAB01719.1| 754|Caenorhabditis elegans MES-3 protein.
Length = 754
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -3
Query: 678 EDEGIVCVE-GIKGMPVHFNYDAIPSVIYTSPEVGWVGKTEEDLKKEGRAYKV----GKF 514
+++ + C+E GI +P+ +PS+ Y S V + T +LKK Y K
Sbjct: 190 DNDSVTCIENGISVIPMANR--TLPSISYNSSNVKNITLTGPELKKAKNVYLAVIVKRKT 247
Query: 513 PFLANSRAKTNGET 472
P L +R T G++
Sbjct: 248 PKLGENRVGTRGKS 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,146,374
Number of Sequences: 27780
Number of extensions: 303350
Number of successful extensions: 810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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