Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e06
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    31   0.13 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.6  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.1  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    27   2.8  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   3.7  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   6.5  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    25   6.5  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   6.5  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   8.7  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 376 SAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVS 555
           S  TT+ S   +    S ST   PQTFP+SG +   ++    +   GW  +   T+ + +
Sbjct: 457 STSTTNPSATPTTGDPSNSTYGGPQTFPNSGNNPNFNRGIAGIVPPGWRLVSSNTQSLST 516

Query: 556 EGVQT 570
               T
Sbjct: 517 NSAMT 521


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 22/81 (27%), Positives = 33/81 (40%)
 Frame = -2

Query: 571 PSAPPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTC 392
           PS PP  P  +      + P+ SSLP    PA    +P  + +L  +   +         
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPK-----V 201

Query: 391 PWCPPTVSLRPPARKARLPST 329
           P  PP +S  P A  +  PS+
Sbjct: 202 P--PPPLSQAPVANTSSRPSS 220


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 28/88 (31%), Positives = 37/88 (42%)
 Frame = -2

Query: 568 SAPPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCP 389
           SAPP  P  S+ STG   P  SS   +  P    P P +    A +   L  N + ++ P
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPA--PPPAIPGRSAPALPPL-GNASRTSTP 415

Query: 388 WCPPTVSLRPPARKARLPSTMLELLLSA 305
             P   SL P A  +  PS    L + A
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGA 443


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -2

Query: 550 PLVSSASTGMSNPLTSSLPW---LCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCP 380
           P  ++AST +S+  +S  PW       A + P P    A  +S   L  N  +S  PW  
Sbjct: 407 PPWAAASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMN-PSSLPPWQQ 465

Query: 379 PT 374
           PT
Sbjct: 466 PT 467


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -2

Query: 601  PVPGHGD*RSPSAPPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAA 443
            PVP      +PSAPP +P  SS     S P  S  P +  P+   P P+ S A
Sbjct: 1051 PVPKSSS-GAPSAPPPVPAPSSEIP--SIPAPSGAPPVPAPSGIPPVPKPSVA 1100


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -2

Query: 577 RSPSAPPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN 410
           + PS+P   P   S S   ++   S+ P++  P+ T  NP+  ++L  ++  + S+
Sbjct: 110 KEPSSPGISPSNDSQSQNTNHTSISANPYVNNPSHTSRNPDSGSSLNTASHEVPSS 165


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 337 EVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 510
           EV+PSS++   RP   +   S ++   P   ++S  PQ +  +  S L+  AT  + S
Sbjct: 82  EVFPSSVMPQLRPLDSSLSVSPEMDGWPWHHNSSSNPQGYAWT-PSLLSSNATSYLHS 138


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
 Frame = -2

Query: 571 PSAPPRIPLVSSASTGMSNPLTSS---LPWLC-LPARTYPNPEMSAALAKSTANLESN*A 404
           PS P     +S+     SN   +S    P L   P R+Y  P  S     S   + S  +
Sbjct: 314 PSTPSSAVTLSNGFDSQSNAYNNSGTGPPMLYKFPQRSYTAPNTS---FNSQRRMSSITS 370

Query: 403 ASTCPWCPPTVSLRPPARKARLPSTM 326
             T  +CP    + PP+     PS +
Sbjct: 371 LPTASFCPVKHGVSPPSLAGNQPSPL 396


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 574 SPSAPPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMS 449
           S +APP++     + T   NP+T +   + LPA   P    S
Sbjct: 307 SATAPPQVTSPMVSQTQPVNPITPNYSSIPLPAERNPKTPQS 348


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +1

Query: 361 ASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLT 540
           +S  P   +  TS  +  +   P+TSP P T      SS+   +T  + S    S   +T
Sbjct: 94  SSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNST--IPSSSSISASTIT 151

Query: 541 RPMVSEGVQ 567
             ++S   Q
Sbjct: 152 TTIISGSTQ 160


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 204 GGGLDPFDVFRDRHEGSS 257
           G G+DPFD+ R    G S
Sbjct: 423 GAGMDPFDILRAYQAGGS 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.128    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,989
Number of Sequences: 5004
Number of extensions: 35888
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)