Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e06
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0059 + 40805196-40805381,40805593-40805925 35 0.044
03_05_0646 - 26385447-26385463,26385546-26385657,26385838-263859... 33 0.13
01_06_0258 + 27950196-27950749,27953670-27954570 33 0.18
12_02_0408 + 18659494-18660362,18660472-18660634,18660976-186611... 32 0.31
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 32 0.31
11_06_0610 - 25449085-25453284 32 0.41
01_01_0600 - 4450664-4450758,4450909-4450960,4451348-4451371,445... 31 0.54
03_05_0781 + 27654764-27655429,27655902-27656004,27656535-276565... 31 0.71
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 31 0.94
07_03_1432 - 26508135-26508881,26509301-26509708 30 1.6
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 30 1.6
03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898 29 2.2
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609... 29 2.2
09_04_0384 - 17153064-17154233 29 2.9
05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507 29 2.9
02_05_1309 + 35627549-35627679,35628377-35629361 29 2.9
11_01_0300 + 2253957-2254245,2254783-2254850,2254967-2255098,225... 29 3.8
03_05_0267 - 22538631-22539452 29 3.8
04_04_1125 + 31085106-31085714 28 5.0
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 28 5.0
01_04_0056 + 15476868-15476896,15477581-15478259 28 6.7
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 27 8.8
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 27 8.8
06_03_1310 + 29238644-29240260 27 8.8
06_01_0514 - 3706178-3706787,3709334-3709441,3710425-3710810 27 8.8
06_01_0290 + 2122758-2123015,2123128-2123544 27 8.8
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 27 8.8
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 8.8
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 27 8.8
>01_07_0059 + 40805196-40805381,40805593-40805925
Length = 172
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/38 (52%), Positives = 20/38 (52%)
Frame = +3
Query: 384 HHGHVEAAQLLSRFAVDFAKAADISGFG*VLAGRQSHG 497
HHGH A S FA FA A I GF V A R SHG
Sbjct: 124 HHGHHPAYSSSSSFAPSFAPAVRIQGFD-VAACRSSHG 160
>03_05_0646 -
26385447-26385463,26385546-26385657,26385838-26385957,
26386120-26386371
Length = 166
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 346 PSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 510
P S A+ P T D S SP PS++P P + R S ++ T +K+
Sbjct: 10 PDSKAATSSPLCLTLDNPTSTSTSPAVPSSAPPPAAALEPSRQSFHERETDAIKA 64
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +1
Query: 325 TSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSL 480
TSYL P+ +SRRPS GT SC P +P+ +P P P + ++ L
Sbjct: 273 TSYLTFGPNPAFSSRRPSEGTA------SCKP-APAPTPAPAGAPGARQTPL 317
>12_02_0408 +
18659494-18660362,18660472-18660634,18660976-18661139,
18661253-18661511,18661605-18661712
Length = 520
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +1
Query: 322 PTSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATG 498
P+S + + + +AG + CSP P P PQ P GRS A + G
Sbjct: 113 PSSLFDPFAGFCLFDATAAAGADSDGWDVRCSPPPPPPPPPPQAPPARGRSKAARRKGG 171
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +3
Query: 483 RQSHGRDEVSGLDIPVDA---DETNGIRGGAD 569
R S G+D VSGLD P DA DE NG + +D
Sbjct: 892 RHSEGKDSVSGLDSPGDATCSDEDNGRKAPSD 923
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.9 bits (69), Expect = 0.41
Identities = 22/78 (28%), Positives = 32/78 (41%)
Frame = -2
Query: 568 SAPPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCP 389
S+PP++P+ S S+P + P ++YP + S S + P
Sbjct: 1062 SSPPQVPVTSEPPPAKSSPPHEPISPPETPEKSYPPSTPEESSPPSVPKASSPPTEKSLP 1121
Query: 388 WCPPTVSLRPPARKARLP 335
P TVSL PP K P
Sbjct: 1122 -PPATVSLPPPTVKPLPP 1138
>01_01_0600 -
4450664-4450758,4450909-4450960,4451348-4451371,
4451450-4451483,4454141-4454209,4454816-4454943,
4455088-4455196,4455558-4455677,4455888-4456084
Length = 275
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = -1
Query: 599 RPWSRRLAQSVCTPSDTIGLVSINRDVQPTDFISPVALSASEDLPES 459
R WS R A S+ D + V DV PT SPV A LPES
Sbjct: 22 RQWSERGAASLAPDEDELEAVERQLDVGPTSVRSPVKRKAK--LPES 66
>03_05_0781 +
27654764-27655429,27655902-27656004,27656535-27656590,
27656895-27657059,27657078-27657083,27657657-27657770,
27658170-27658262
Length = 400
Score = 31.1 bits (67), Expect = 0.71
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +1
Query: 379 AGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLTRPMVSE 558
A DT++++S SP + PKP+ D+ + SL D K +LL+ + +
Sbjct: 58 ASHPDTARRVSVSPAAVEPPPKPRALLDAIKRSLLDSLAALKKPA--LALLLAGALLAAA 115
Query: 559 GVQTDCASLRDQGRV 603
G A GRV
Sbjct: 116 GPHHGAALAASGGRV 130
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 30.7 bits (66), Expect = 0.94
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = -2
Query: 571 PSAPPRIPLVSSASTGM-SNPLTSSLPWLCLPARTYPNPEMSAALA----KSTANLESN* 407
P A +P VS M P S P +PA + P +S A + S++N++SN
Sbjct: 242 PPAKVTVPEVSPTKPMMLQKPQLVSSP---VPAISKPISVVSQATSLPRSASSSNVDSNV 298
Query: 406 AASTCPWCPPTVSLRPPARKARLPST 329
S+ P P SL PPA+ L +T
Sbjct: 299 TKSSGPLVVPPTSLPPPAQPETLATT 324
>07_03_1432 - 26508135-26508881,26509301-26509708
Length = 384
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -2
Query: 574 SPSAPPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AAST 395
SPS PP P SS ++ P++ S P LP P A+ + + L +S+
Sbjct: 41 SPSTPPTYPPPSSTPPSLA-PVSPSPPTTYLPPSPTPPSPAPASPSPPSLGLRVGYYSSS 99
Query: 394 CP 389
CP
Sbjct: 100 CP 101
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2
Query: 592 GHGD*RSPSAPPRIPLVSSASTGM-SNPLTSSLPWLCLPARTYPNPEMSA-ALAKSTANL 419
GH + P+ PP + L +AS+ + + P+ + P P+P MSA AL + A +
Sbjct: 312 GHQERAVPAKPPALCLAPNASSSLFTAPVPADRQQFAPPPPPSPSPHMSATALLQKAAQM 371
Query: 418 ESN*AASTCPWC 383
+ ++S+ C
Sbjct: 372 GATSSSSSFLRC 383
>03_01_0299 - 2323945-2324422,2324542-2324671,2324763-2324898
Length = 247
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Frame = +2
Query: 206 RWSRSIRCIPRQA---------RRFQRCSRQHRPGAQLLEHHR*QEQFQHRTWKSGL 349
RWS RC+P + F++ R AQLL ++ Q+Q QHR + L
Sbjct: 89 RWSAIARCLPGRTDNEIKNYWRTHFKKARPSRRARAQLLHQYQLQQQQQHRQYLHSL 145
>01_03_0050 +
11959421-11959736,11959892-11959960,11960641-11960979,
11961090-11961152,11962472-11962962,11963773-11964441
Length = 648
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 349 SSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVG 516
S L S+ S K S SP + + T PD G+ ++ +TG+ + G
Sbjct: 539 SGLTQSKEASKTPATKKKTESTSPAAKKLKIEETTAPDEGKKAVKTHSTGKKRKAG 594
>09_04_0384 - 17153064-17154233
Length = 389
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 331 YLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKS 510
++E W + RR + +++ S S S S SP P++ P + DK +K
Sbjct: 234 WIEFWSDAASDRRRRVSSSSEASTASSSSSSSGCPSPPPRSTP-LWVDNYLDKLGSVLKK 292
Query: 511 VGW 519
GW
Sbjct: 293 GGW 295
>05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507
Length = 353
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = -2
Query: 574 SPSAPPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AAST 395
+P PP L A+ +P ++ L LP + P+P +AA A + + + + ++
Sbjct: 53 TPPPPPLFTLDDRAAAVDFSP-DAAASELLLPVASSPSPRSAAAAASRSPSWDRSRGRAS 111
Query: 394 CPWCPPTVSLRPPARK 347
P P + PP ++
Sbjct: 112 APGSPMDGVVEPPRKE 127
>02_05_1309 + 35627549-35627679,35628377-35629361
Length = 371
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +3
Query: 303 IADKSSSNIVLGSLAFLAGGLKETVGGHHGHVEAAQLLSRFAVDFAKAADISGFG*VLAG 482
+A++ + +G +A LAG L++ G GH +AA AVD A A VL G
Sbjct: 200 LAEEPLDGLAVGLVAELAGELEDAGGADDGHADAAAA----AVDLAVA--------VLGG 247
Query: 483 RQSHGRDEVSGL 518
R ++G G+
Sbjct: 248 RLANGEGGAIGV 259
>11_01_0300 +
2253957-2254245,2254783-2254850,2254967-2255098,
2255811-2255969,2256124-2256489
Length = 337
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 391 DTSKQLSCSPGSPSTSPKPQTFP--DSGRSSLADKATGEMKSVG 516
+ +K+ SP SPSTSP P P SG A AT M S+G
Sbjct: 35 EAAKEYQSSPSSPSTSPTPSPPPVAASGHGGEA-AATPTMWSLG 77
>03_05_0267 - 22538631-22539452
Length = 273
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Frame = +1
Query: 412 CSPGSPSTSPKP---QTFPDS---GRSSLADKATGEMKSVGW---TSLLMLTRPMVSEGV 564
CSP SP SP P +T P S R A + T +GW + ++ L RP+V +
Sbjct: 183 CSPSSPPASPSPSPARTSPPSSSPSRGCSARRPTPSPPVLGWVIPSVVVALLRPLVCDAD 242
Query: 565 QTDCASLRDQ 594
A L Q
Sbjct: 243 AVISAVLATQ 252
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/86 (26%), Positives = 30/86 (34%)
Frame = -2
Query: 571 PSAPPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTC 392
P PP P + + + P T PW PA P P + A A
Sbjct: 39 PPPPPCQPPPPTPTP--ATPTTPPTPWTPPPAT--PTPPTPTPWTPTPATPPPTPATPAT 94
Query: 391 PWCPPTVSLRPPARKARLPSTMLELL 314
P PPT + P + P L+LL
Sbjct: 95 PTTPPTPAPAPSTPTGKCPVDTLKLL 120
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -2
Query: 601 PVPGHGD*RSPSAPPRIPLVSSASTGMSNPLTSSLPWLCLPA---RTYPNPEMSAALAKS 431
P P RS SA P L S S SN SS LP+ P+P+ AALA +
Sbjct: 90 PSPSPSPRRSTSASPSATLSSLVSRTFSNNAASSSSSKPLPSLFRGVRPSPKPGAALAAA 149
Query: 430 TA 425
A
Sbjct: 150 AA 151
>01_04_0056 + 15476868-15476896,15477581-15478259
Length = 235
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 337 EVWPSSLVASRRPSAGTTD----TSKQLSCSPGSPSTSPKPQTFPDSGR 471
+ P+ L++ RP+A T T+ + +P + + +PKP T PD R
Sbjct: 50 DTMPNCLISLARPAAPTLPHSHLTNPRHPATPTATAATPKPNTPPDPTR 98
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +1
Query: 328 SYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTS-----PKPQTFPDSGRSSLADKA 492
+Y E+ +S R+ S + S + CSPGS S+S P+P G SSL
Sbjct: 550 TYNELPRTSSFLRRQSSESSQLNSASVKCSPGSGSSSTTMGPPRPFNTVSGGASSLLGSP 609
Query: 493 TGEM 504
M
Sbjct: 610 LSSM 613
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 27.5 bits (58), Expect = 8.8
Identities = 30/93 (32%), Positives = 37/93 (39%)
Frame = -2
Query: 601 PVPGHGD*RSPSAPPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTAN 422
P PG S PRIPL SS S G S+ + + T P P L S+
Sbjct: 163 PPPGKPPMYKSSIGPRIPLPSS-SAGASSSMPGTEE---AGPSTLPPPPPPPPLPASSEP 218
Query: 421 LESN*AASTCPWCPPTVSLRPPARKARLPSTML 323
++ + AAS P PP PA A P L
Sbjct: 219 VDPS-AASLPPLPPPPPPPPKPANIAGAPGLPL 250
>06_03_1310 + 29238644-29240260
Length = 538
Score = 27.5 bits (58), Expect = 8.8
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Frame = -2
Query: 601 PVPGH-GD*RSPSAPPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTA 425
P+P H R+P PP + + P S P +P T P A+ S++
Sbjct: 384 PLPHHMPPRRTPPTPPPPSSPTPSHLPPPPPTYSESPKSSMPPSTSPPSSHGASPPSSSS 443
Query: 424 NLESN*AASTCP-WCPPTVSLRPPARKARLPST 329
+ + P PP + PP A +P T
Sbjct: 444 SPPTEHPGYVLPPLTPPPPTTTPPGHHAPVPGT 476
>06_01_0514 - 3706178-3706787,3709334-3709441,3710425-3710810
Length = 367
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 198 NTGGGLDP-FDVFRDRHE--GSSAVLVSTGQEHSYLNIIADKSSSNIVLGSLAFLAGG 362
+ G +DP FD F D + G V +H+ N++AD +S N G A + GG
Sbjct: 14 DAGAVVDPTFDFFIDHNNFLGMPPPPVQQADDHAMNNVVAD-ASMNYFYGGGAMVFGG 70
>06_01_0290 + 2122758-2123015,2123128-2123544
Length = 224
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 379 AGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLTR 543
A T ++ +CSPGSP +S + SG D A ++ G L L++
Sbjct: 14 AATAAEDERFACSPGSPVSSGSGKRGSGSGSGDEVDDAGCDVGGGGARKKLRLSK 68
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 366 KETVGGHHGHVEAAQLLSRFAVDFAKAADISGFG*VLAGRQSHGRDE-VSGLDI 524
++++GG G + + L R + FA AD+ LAGRQ+ E + LDI
Sbjct: 404 EDSLGGGQG-TQRRERLFRVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDI 456
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.5 bits (58), Expect = 8.8
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -2
Query: 601 PVPGHGD*RSPSAPPRIPLVSSASTGMSNPLTSSLPWLCLP-ARTYPNPEMSAALAKSTA 425
PVP +P PP+ P + + P+ + P +P A+ P P + A A +T
Sbjct: 179 PVPSPS---APPLPPQPPPPRNQAQADKAPIPVAPPGAAVPPAQPQPQPPQAGAEAVTTE 235
Query: 424 NLESN*AASTCPWCPPTVSLRPPARKARLP 335
+ E+ AA+ PP + P + +P
Sbjct: 236 STEATQAAN-----PPATTASNPHQAPVIP 260
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 27.5 bits (58), Expect = 8.8
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -2
Query: 559 PRIPLVSSASTGMSNPLTSS-LPWLCLP--ARTYPNPEMSAALAKSTANLESN*AASTCP 389
PR+ SS ++ S+PL S+ P + + A +P + A ST AS P
Sbjct: 42 PRLLFFSSTASSSSSPLLSTGSPSVAVSPNANLSFDPSLIPTPAASTPPASPTANASPPP 101
Query: 388 WCPPTVS-LRPPARKARL 338
PP LRPP ARL
Sbjct: 102 SLPPPPPPLRPPPPPARL 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.128 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,611,284
Number of Sequences: 37544
Number of extensions: 317349
Number of successful extensions: 1686
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1680
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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