Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e06
(608 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 31 0.64
Z75714-12|CAB00066.1| 368|Caenorhabditis elegans Hypothetical p... 30 1.5
AL033508-5|CAA22057.1| 368|Caenorhabditis elegans Hypothetical ... 30 1.5
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 29 2.6
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 29 2.6
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 29 2.6
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 29 2.6
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 29 3.4
AC024876-6|AAS80337.1| 181|Caenorhabditis elegans Hypothetical ... 29 3.4
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 29 3.4
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 6.0
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 6.0
AL110484-7|CAB54398.1| 286|Caenorhabditis elegans Hypothetical ... 28 6.0
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 6.0
Z92822-1|CAB07300.4| 311|Caenorhabditis elegans Hypothetical pr... 27 7.9
U58764-3|AAB00725.1| 122|Caenorhabditis elegans Hypothetical pr... 27 7.9
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 27 7.9
AY466439-1|AAS45709.1| 311|Caenorhabditis elegans SID-2 protein. 27 7.9
AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical ... 27 7.9
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 31.1 bits (67), Expect = 0.64
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = +1
Query: 340 VWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGW 519
V P++ ++RP++ T +S S G+ STSP P T S SS T
Sbjct: 334 VIPTTTQTTQRPTS--TGIPSTVSTSQGTSSTSPIPSTTQTS--SSAPSTYTSNFTPSPT 389
Query: 520 TSLLMLTRPMVSEGVQTDCAS 582
T+LL T ++GV T S
Sbjct: 390 TTLLTSTIAPSTQGVPTSSKS 410
>Z75714-12|CAB00066.1| 368|Caenorhabditis elegans Hypothetical
protein Y106G6G.1 protein.
Length = 368
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 536 SINRDVQ-PTDFISPVALSASEDLPESGNVCGFGEV 432
++N +V P + I PVA +S LPE+G V G E+
Sbjct: 301 NVNGEVTAPEEKIDPVARDSSHALPENGEVTGNSEI 336
>AL033508-5|CAA22057.1| 368|Caenorhabditis elegans Hypothetical
protein Y106G6G.1 protein.
Length = 368
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 536 SINRDVQ-PTDFISPVALSASEDLPESGNVCGFGEV 432
++N +V P + I PVA +S LPE+G V G E+
Sbjct: 301 NVNGEVTAPEEKIDPVARDSSHALPENGEVTGNSEI 336
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 568 SAPPRIPLVSSASTGMSN-PLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN 410
SAP + P SS +TG+S+ L +P P+ PN A+S +N +N
Sbjct: 2244 SAPVQQPSTSSVTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSVAN 2297
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 568 SAPPRIPLVSSASTGMSN-PLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN 410
SAP + P SS +TG+S+ L +P P+ PN A+S +N +N
Sbjct: 2266 SAPVQQPSTSSVTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSVAN 2319
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 568 SAPPRIPLVSSASTGMSN-PLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN 410
SAP + P SS +TG+S+ L +P P+ PN A+S +N +N
Sbjct: 1087 SAPVQQPSTSSVTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSVAN 1140
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 568 SAPPRIPLVSSASTGMSN-PLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN 410
SAP + P SS +TG+S+ L +P P+ PN A+S +N +N
Sbjct: 1065 SAPVQQPSTSSVTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSVAN 1118
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 568 SAPPRIPLVSSASTGMSN-PLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN 410
SAP + P SS +TG+S+ L +P P+ PN A+S +N +N
Sbjct: 2244 SAPVQQPSTSSVTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSVAN 2297
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 568 SAPPRIPLVSSASTGMSN-PLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN 410
SAP + P SS +TG+S+ L +P P+ PN A+S +N +N
Sbjct: 2266 SAPVQQPSTSSVTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSVAN 2319
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +1
Query: 373 PSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADKATGEMKSVGWTSLLMLT 540
P+A + TS Q S S ++SP P P + R + A ++T ++V T+ L LT
Sbjct: 266 PTATSPKTSSQPVSSSTSSTSSPAPTNPPTTSRPTTASQSTAS-QNVETTTKLGLT 320
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 28.7 bits (61), Expect = 3.4
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Frame = +1
Query: 325 TSYLEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTS-----PKPQTFPDSGRSSLADK 489
+S V + +A+ +A T TSKQ S S +PSTS P T S S A
Sbjct: 2838 SSTANVASMAAMAAAAQAASTPTTSKQASASTSTPSTSAVASAQTPSTSVPSTSSQAAAA 2897
Query: 490 ATGEMKSVGWTSLLMLTRPMVSEGV 564
A S + L+LT M + +
Sbjct: 2898 AASSANSGEDINPLLLTALMQNPAI 2922
>AC024876-6|AAS80337.1| 181|Caenorhabditis elegans Hypothetical
protein Y94H6A.10 protein.
Length = 181
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 418 PGSPSTSPKP-QTFPDSGRSSLADKATGEMKSVGW 519
P S S S P + PDS RS++ K T +M+ GW
Sbjct: 28 PESSSKSKSPLKDGPDSQRSNIRRKLTTQMQKQGW 62
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 346 PSSLVASRRPSAGTTDTSKQLSCSPGSPSTS-PKPQTFPDSGRSSLADKATGEMKSVGWT 522
PS+LV S P++ +T + + +P + ST P T P ++ A + T T
Sbjct: 57 PSTLVLSSTPTSSSTPIKETTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEAPSSST 116
Query: 523 SLLMLTRPMVSEGVQTD 573
+ + T E T+
Sbjct: 117 TPVQTTTTTAPETTSTE 133
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 373 PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 495
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1087 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1129
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 373 PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 495
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 373 PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 495
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1087 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1129
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 373 PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 495
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713
>AL110484-7|CAB54398.1| 286|Caenorhabditis elegans Hypothetical
protein Y38E10A.7 protein.
Length = 286
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -1
Query: 311 VSDDVQVAVLLAGADENSAGTFVPVAEYIE---WIETTAGIT 195
+S + V+L NSAGTF P A Y W E T T
Sbjct: 59 LSPTTRTPVILVHGTTNSAGTFAPQAAYFRANGWSEETVYAT 100
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 373 PSAGTTDTSKQL--SCSPGSPSTSPKPQTFPDSGRSSLADKAT 495
P+A TDT + C G SP PQTFP L ++ T
Sbjct: 1671 PNALCTDTEEGYVCRCKSGFVDYSPNPQTFPGMVCKELVNECT 1713
>Z92822-1|CAB07300.4| 311|Caenorhabditis elegans Hypothetical
protein ZK520.2 protein.
Length = 311
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -2
Query: 562 PPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN 410
PPR P+ +S T +S P + + P SAA +T+N + N
Sbjct: 252 PPRDPMYASPPTPLSQPTPARNTVMTTQELVVPTANSSAAQPSTTSNGQFN 302
>U58764-3|AAB00725.1| 122|Caenorhabditis elegans Hypothetical
protein M03E7.2 protein.
Length = 122
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 252 SSAVLVSTGQEHSYLNIIADKSSSNIVLGSLAFLAGGLKETVGG 383
SS + +S+ SY + + D S++ LGS+ GG+ GG
Sbjct: 12 SSLIAISSALPASYSSSLNDPLLSSLGLGSMGMGMGGMNGMYGG 55
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 385 TTDTSKQLSCSPGSPSTSPKPQTFPDSGRSSLADK 489
T +TS+ P P T KP++ S +SS + K
Sbjct: 1212 TAETSEDSEVKPYQPQTPKKPESRKSSAKSSASSK 1246
>AY466439-1|AAS45709.1| 311|Caenorhabditis elegans SID-2 protein.
Length = 311
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -2
Query: 562 PPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN 410
PPR P+ +S T +S P + + P SAA +T+N + N
Sbjct: 252 PPRDPMYASPPTPLSQPTPARNTVMTTQELVVPTANSSAAQPSTTSNGQFN 302
>AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical
protein M01B12.4c protein.
Length = 678
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = -2
Query: 556 RIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLESN*AASTCPWCPP 377
R+ + + S GM++P+T++LP + SA+L ++ E + ++S+ P P
Sbjct: 561 RLAAILAKSRGMASPMTNTLPPTADDIKDSTPAVTSASLPLLPSSPEPS-SSSSSPAQQP 619
Query: 376 TVSLRPPARKA 344
+ S A KA
Sbjct: 620 SASTEETAEKA 630
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.128 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,472
Number of Sequences: 27780
Number of extensions: 225447
Number of successful extensions: 999
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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