Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e06
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.44 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = -2

Query: 595 PGHGD*RSPSAPPRIPLVSSASTGMSNPLTSSLPWLCLPARTYPNPEMSAALAKSTANLE 416
           PG G   +  A   +  V S+++   N   +    L L AR  PN  +  +LA   ++L 
Sbjct: 236 PGSGSLPASPADSGVSDVESSTSSGGNEDAN----LLLKARLNPNSSLQPSLASHHSHLS 291

Query: 415 SN*AASTC--PWC-PPTVSLRPPA 353
           S    S C  P   P T    PP+
Sbjct: 292 SALGRSACHSPGVYPSTAGFLPPS 315


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -1

Query: 491 ALSASEDLPESGNVCGFGEVDGEPGEQLSCFDVSVVPADGLLEATSEEGQTSKYDV 324
           +++ +E L E  N C + ++   PGE  S   ++V     +    S   +T ++DV
Sbjct: 7   SMTQTELLQELTNDCRYDKMTRPPGEINSINPINVYTKAYIYTIKSNMAKTLQFDV 62


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 391 DTSKQLSCSPGSPSTSPKPQTFP 459
           D+ + L+ S  SPS SP+P   P
Sbjct: 870 DSQQPLNLSKKSPSPSPRPLVGP 892


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 574 SPSAPPRIPLVSSASTGMSNP 512
           SPS  PRI    S+ST  S P
Sbjct: 510 SPSPNPRIASAPSSSTSSSPP 530


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 334 LEVWPSSLVASRRPSAGTTDTSKQLSCSPGSPSTSPKPQTFPDSGR 471
           +EV P S +    PS        Q+SC   SP     P +  +SGR
Sbjct: 365 IEVIPLSAIPE--PSKNPAMGHWQMSCVACSPPPRQTPPSRKESGR 408


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -1

Query: 437 EVDGEPGEQLSCFDVSVV---PADGLLEATSEEGQTSKYD 327
           E D + G+     DV      PA+G+L       +T KYD
Sbjct: 391 EDDDDDGDDDDDDDVEAANGKPAEGMLTDVFHVQETDKYD 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.128    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,259
Number of Sequences: 438
Number of extensions: 2468
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)