Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e05
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    31   0.096
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.39 
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    27   1.6  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   4.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   6.3  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   8.4  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   8.4  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   8.4  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   8.4  

>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 31.1 bits (67), Expect = 0.096
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 269 TSLTRFLSGMALYSAFSCHRSLLLKLVPTIRSLHCITQTKDKNMKIKTG 415
           T+ T+F S    Y A + H SLL KL+     L+ +   K K ++I  G
Sbjct: 58  TNFTKF-SKFVYYLAITLHTSLLTKLIYCHADLYALQSIKYKRLRINNG 105


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 267 FFSDPGQQLIMGIIARDLDHSDAEASITAGGIGFSYANIKLKSPRGSGLN 118
           F+S PG++ I  I+   L  S       +GG G  Y  + +KS    G N
Sbjct: 27  FYSTPGERRIKDILTEKLSPSSLRVIDVSGGCGSMY-QVAIKSKAFQGKN 75


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 124 SRASWAFQLYVGIRKTDASCSNTCFSIRV 210
           +R SWA+    G  K   +CS TC    V
Sbjct: 223 ARVSWAWSTVCGCYKNTYTCSQTCLEDEV 251


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -2

Query: 366 KDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEV 268
           K+LIV TS  ++ L +E+  +NAI   KR++E+
Sbjct: 711 KELIVQTSSFQKELVEERERHNAI--SKRLQEI 741


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -3

Query: 116 TNLKSTRKKVIL*TIVFNQEVFYHFMF 36
           +N+K ++K+++   + F+ EV+  F+F
Sbjct: 266 SNVKCSKKQILFSLLYFSSEVYLSFVF 292


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = -2

Query: 210 HSDAEASITAGGIGFSYANIKLKSPRGSGLNYQLEIYT*KSYTLDHSFQSRSFLSFHV*F 31
           H+D   +I  G I  S ++I L++ +G     QLE +   +  +   ++  SF SF++  
Sbjct: 21  HADKGITIKTGKIAVSSSDIPLRNRKGLLTWDQLEPWQQDNQYIISGYRPPSF-SFYLCV 79

Query: 30  RLLYSIFN 7
           + ++ + N
Sbjct: 80  KSIFHVHN 87


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 251 PGSEKNTSLTRFLSGMALYSAFSCHRSL 334
           PG    T++    S    +SA SCHR+L
Sbjct: 453 PGKTVATTVCHSSSSSGDFSALSCHRNL 480


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 241 QLLSRIRKKYFFDSFLEWDGVIFGF 315
           Q  S I    +FD   EWD V+ GF
Sbjct: 499 QKTSSILVDLYFDFKAEWDNVMLGF 523


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -2

Query: 321 QEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAEASITAGGIGFSYANIKLK 142
           +EKA+   I  K+  +E F+ +   + +   I R + H D  ASI      ++ ++I+ K
Sbjct: 753 EEKAKEKGINAKQASQE-FYENTCMRAVNQSIGRAIRHRDDYASIILLDSRYNRSSIQRK 811

Query: 141 SP 136
            P
Sbjct: 812 LP 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,947
Number of Sequences: 5004
Number of extensions: 40772
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)