Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e05
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 29 1.4
U51999-4|AAA96085.2| 627|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 27 5.7
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 27 5.7
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass... 27 5.7
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 27 5.7
AF040653-2|ABC48247.1| 343|Caenorhabditis elegans Hypothetical ... 27 5.7
AC006627-10|AAK85465.1| 499|Caenorhabditis elegans Hypothetical... 27 5.7
AF025468-6|AAB71043.2| 283|Caenorhabditis elegans Hypothetical ... 27 7.6
AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical ... 27 7.6
U23525-7|AAC46569.1| 557|Caenorhabditis elegans Yeast smf (diva... 27 10.0
U23525-6|AAU05559.1| 471|Caenorhabditis elegans Yeast smf (diva... 27 10.0
AF022985-11|AAB69967.2| 650|Caenorhabditis elegans Hypothetical... 27 10.0
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 466 THCGKRFKKKQQQNEVRSRFDF 401
T GK+ KKKQQ++ VR FD+
Sbjct: 273 TSSGKKNKKKQQKSPVREEFDY 294
>U51999-4|AAA96085.2| 627|Caenorhabditis elegans Hypothetical
protein C43H6.4 protein.
Length = 627
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 96 TCRFQVGSLIQSLVGFSTLCWHKK 167
T R+ +GSL+Q + ST+C+ KK
Sbjct: 39 TIRYILGSLLQDYINESTMCYWKK 62
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 493 YNNRRT*HITHCGKRFKKK 437
YNNR++ H H GK KKK
Sbjct: 28 YNNRKSIHHNHQGKTIKKK 46
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 493 YNNRRT*HITHCGKRFKKK 437
YNNR++ H H GK KKK
Sbjct: 28 YNNRKSIHHNHQGKTIKKK 46
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform e protein.
Length = 2702
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -2
Query: 375 IQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE 196
++ +LI G + K +Q + ++ PL + +P QQ+I I+ + L DA+
Sbjct: 2468 LEYSNLIFGIDYTKSNFYQGERTFDKRPL--HTIDPAEMNPYQQVIQ-IVGKTLSSFDAD 2524
Query: 195 ASITAGGIG 169
I A G G
Sbjct: 2525 GQIPAYGFG 2533
>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform a protein.
Length = 1633
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -2
Query: 375 IQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE 196
++ +LI G + K +Q + ++ PL + +P QQ+I I+ + L DA+
Sbjct: 1399 LEYSNLIFGIDYTKSNFYQGERTFDKRPL--HTIDPAEMNPYQQVIQ-IVGKTLSSFDAD 1455
Query: 195 ASITAGGIG 169
I A G G
Sbjct: 1456 GQIPAYGFG 1464
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -2
Query: 375 IQCKDLIVGTSFNKRLLWQEKAEYNAIPLKKRVKEVFFSDPGQQLIMGIIARDLDHSDAE 196
++ +LI G + K +Q + ++ PL + +P QQ+I I+ + L DA+
Sbjct: 7314 LEYSNLIFGIDYTKSNFYQGERTFDKRPL--HTIDPAEMNPYQQVIQ-IVGKTLSSFDAD 7370
Query: 195 ASITAGGIG 169
I A G G
Sbjct: 7371 GQIPAYGFG 7379
>AF040653-2|ABC48247.1| 343|Caenorhabditis elegans Hypothetical
protein K05F6.11 protein.
Length = 343
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 258 DPGQQLIMGIIARDLDHSDAEASI 187
D G+QL++G + RDL H D + +
Sbjct: 318 DNGKQLLIGTVFRDLTHCDIDVPL 341
>AC006627-10|AAK85465.1| 499|Caenorhabditis elegans Hypothetical
protein E01A2.8 protein.
Length = 499
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 258 DPGQQLIMGIIARDLDHSDAEASI 187
D G+QL++G + RDL H D + +
Sbjct: 474 DNGKQLLIGTVFRDLTHCDIDVPL 497
>AF025468-6|AAB71043.2| 283|Caenorhabditis elegans Hypothetical
protein T27A1.2 protein.
Length = 283
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 57 FLIENYGLKYNFFTCRFQVGSLIQSLV 137
F+++N+ LK+ F C FQ+ + L+
Sbjct: 111 FILKNFDLKFGFSNCSFQLVGFNKKLI 137
>AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical
protein C05C8.6 protein.
Length = 581
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 71 VFNQEVFYHFMFNLDFCIQYS 9
+FN F+ F +D+C+QYS
Sbjct: 173 IFNAAYFFQFTDLIDYCMQYS 193
>U23525-7|AAC46569.1| 557|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 1, isoform
a protein.
Length = 557
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Frame = -2
Query: 420 FAPVLIFIFLSLVCVIQCKDL-----IVGTSFNK 334
FA VL ++L+L C++ C+ + I G SFNK
Sbjct: 501 FAYVLFVLYLALYCLVSCEIIPDTVSIRGFSFNK 534
>U23525-6|AAU05559.1| 471|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 1, isoform
b protein.
Length = 471
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Frame = -2
Query: 420 FAPVLIFIFLSLVCVIQCKDL-----IVGTSFNK 334
FA VL ++L+L C++ C+ + I G SFNK
Sbjct: 415 FAYVLFVLYLALYCLVSCEIIPDTVSIRGFSFNK 448
>AF022985-11|AAB69967.2| 650|Caenorhabditis elegans Hypothetical
protein T15B7.14 protein.
Length = 650
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 291 LKKRVKEVFFSD-PGQQLIMGIIARDLDHSDAEASITAGGIGFSYANIKLKS 139
L ++K + P Q I+ + R DH + + T G GF +K+ +
Sbjct: 207 LHNKIKRYHLQNVPPPQYILNTVKRFFDHFKQDCNATVGVCGFGTHKVKISN 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,025,167
Number of Sequences: 27780
Number of extensions: 227747
Number of successful extensions: 521
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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