Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e04
(246 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14973-1|AAA85661.1| 56|Homo sapiens ribosomal protein S29 pro... 106 1e-23
L31610-1|AAB27426.1| 56|Homo sapiens protein ( Homo sapiens (c... 106 1e-23
BC035313-1|AAH35313.1| 56|Homo sapiens ribosomal protein S29 p... 106 1e-23
BC032813-1|AAH32813.1| 56|Homo sapiens ribosomal protein S29 p... 106 1e-23
AB061847-1|BAB79485.1| 56|Homo sapiens ribosomal protein S29 p... 106 1e-23
AB007165-1|BAA25827.1| 26|Homo sapiens ribosomal protein S29 p... 54 1e-07
BC047704-1|AAH47704.1| 183|Homo sapiens SPATA3 protein protein. 29 3.6
AY032925-1|AAK54455.1| 183|Homo sapiens testis and spermatogene... 29 3.6
AK093385-1|BAC04149.1| 192|Homo sapiens protein ( Homo sapiens ... 29 3.6
AY273896-1|AAP33047.2| 724|Homo sapiens OATP-H protein. 28 4.8
AK098414-1|BAC05301.1| 185|Homo sapiens protein ( Homo sapiens ... 27 8.4
>U14973-1|AAA85661.1| 56|Homo sapiens ribosomal protein S29
protein.
Length = 56
Score = 106 bits (254), Expect = 1e-23
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = -1
Query: 165 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 1
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KL
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 55
>L31610-1|AAB27426.1| 56|Homo sapiens protein ( Homo sapiens
(clone cori-1cl5) S29 ribosomal protein mRNA, complete
cds. ).
Length = 56
Score = 106 bits (254), Expect = 1e-23
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = -1
Query: 165 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 1
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KL
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 55
>BC035313-1|AAH35313.1| 56|Homo sapiens ribosomal protein S29
protein.
Length = 56
Score = 106 bits (254), Expect = 1e-23
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = -1
Query: 165 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 1
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KL
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 55
>BC032813-1|AAH32813.1| 56|Homo sapiens ribosomal protein S29
protein.
Length = 56
Score = 106 bits (254), Expect = 1e-23
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = -1
Query: 165 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 1
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KL
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 55
>AB061847-1|BAB79485.1| 56|Homo sapiens ribosomal protein S29
protein.
Length = 56
Score = 106 bits (254), Expect = 1e-23
Identities = 43/55 (78%), Positives = 50/55 (90%)
Frame = -1
Query: 165 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 1
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF KL
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL 55
>AB007165-1|BAA25827.1| 26|Homo sapiens ribosomal protein S29
protein.
Length = 26
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = -1
Query: 81 GLIRKYGLNICRQCFREYAHDIGFKK 4
GLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 1 GLIRKYGLNMCRQCFRQYAKDIGFIK 26
>BC047704-1|AAH47704.1| 183|Homo sapiens SPATA3 protein protein.
Length = 183
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 54 CSNRTCGLSHACWSRIGM 107
CS TC S ACW R+G+
Sbjct: 102 CSCATCPCSSACWRRLGL 119
>AY032925-1|AAK54455.1| 183|Homo sapiens testis and spermatogenesis
cell apoptosis related protein 1 protein.
Length = 183
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 54 CSNRTCGLSHACWSRIGM 107
CS TC S ACW R+G+
Sbjct: 102 CSCATCPCSSACWRRLGL 119
>AK093385-1|BAC04149.1| 192|Homo sapiens protein ( Homo sapiens
cDNA FLJ36066 fis, clone TESTI2019257. ).
Length = 192
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 54 CSNRTCGLSHACWSRIGM 107
CS TC S ACW R+G+
Sbjct: 111 CSCATCPCSSACWRRLGL 128
>AY273896-1|AAP33047.2| 724|Homo sapiens OATP-H protein.
Length = 724
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 30 TL*STVCICSNRTCGLSHACW--SRIGMTEILVRIC 131
T+ ST + CG+ ACW I M +LV IC
Sbjct: 637 TIDSTCILWDINDCGIKGACWIYDNIKMAHMLVAIC 672
>AK098414-1|BAC05301.1| 185|Homo sapiens protein ( Homo sapiens
cDNA FLJ25548 fis, clone JTH01554. ).
Length = 185
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 39 STVCICSNRTCGLSHACWSRIGMTEILVRICEGENTKY 152
ST C+ S+++ G+ CW + ++E+L+ + KY
Sbjct: 119 STTCLESSKS-GVGKCCWPHVFISEVLLGHSHAHSFKY 155
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,063,797
Number of Sequences: 237096
Number of extensions: 730189
Number of successful extensions: 1773
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1773
length of database: 76,859,062
effective HSP length: 59
effective length of database: 62,870,398
effective search space used: 1383148756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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