Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e04
(246 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal prote... 100 3e-22
Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical pr... 31 0.11
AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear recep... 31 0.11
AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical ... 30 0.19
Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical pr... 29 0.33
AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical... 28 0.76
U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily ass... 27 1.3
AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical ... 27 1.3
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z81529-7|CAB04292.1| 248|Caenorhabditis elegans Hypothetical pr... 27 2.3
AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical ... 27 2.3
AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical ... 27 2.3
Z74032-6|CAA98468.2| 234|Caenorhabditis elegans Hypothetical pr... 25 5.4
AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical... 25 5.4
Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical pr... 25 7.1
AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical... 25 7.1
AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical... 25 7.1
AL022716-3|CAA18771.1| 272|Caenorhabditis elegans Hypothetical ... 25 7.1
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 25 7.1
Z81449-9|CAB03760.3| 700|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z81449-8|CAI70399.1| 705|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z35603-2|CAA84674.1| 418|Caenorhabditis elegans Hypothetical pr... 25 9.4
X64415-2|CAA45761.1| 700|Caenorhabditis elegans unc-93 protein. 25 9.4
X64415-1|CAA45760.1| 705|Caenorhabditis elegans unc-93 protein. 25 9.4
U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 25 9.4
AF026214-7|AAP68943.1| 640|Caenorhabditis elegans Hypothetical ... 25 9.4
>U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 29 protein.
Length = 56
Score = 99.5 bits (237), Expect = 3e-22
Identities = 39/55 (70%), Positives = 47/55 (85%)
Frame = -1
Query: 165 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 1
MG N+W+SHPR++G GSRSCR C+ HGLIRKYGL++CR+CFRE A DIGFKKL
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKL 55
>Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical
protein C29E6.5 protein.
Length = 449
Score = 31.1 bits (67), Expect = 0.11
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 105 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 4
CR C R+ + +G++ICR C + + KK
Sbjct: 47 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80
>AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear receptor
NHR-43 protein.
Length = 459
Score = 31.1 bits (67), Expect = 0.11
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 105 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 4
CR C R+ + +G++ICR C + + KK
Sbjct: 57 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90
>AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.9 protein.
Length = 250
Score = 30.3 bits (65), Expect = 0.19
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 82 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 231
M A S PR+ + + N + +LNC S+T ++ ++P+ WRT
Sbjct: 93 MKTAAASTCPRTCGLCCQTEAYNCPNVAYPRLNCASITLSQCNSPA-WRT 141
>Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical
protein K10D6.1 protein.
Length = 457
Score = 29.5 bits (63), Expect = 0.33
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 106 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 5
M I + + WL+P ++F+H+ Q + H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134
>AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical
protein T15B7.16 protein.
Length = 435
Score = 28.3 bits (60), Expect = 0.76
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 106 MPILLQQAWLNPQVRFEHMQTVLQRV 29
+ +L Q W +P++RF+H+ LQ +
Sbjct: 80 LDLLFSQIWHDPRLRFDHLTNCLQNL 105
>U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily
assigned gene nameprotein 293 protein.
Length = 385
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 160 AHFKKLNCFSLTSNKLDTPSRWRT 231
A F +LNC ++T+N+ P+ WRT
Sbjct: 255 AQFPRLNCDTITNNQCKDPN-WRT 277
>AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.10 protein.
Length = 250
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 82 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 231
M A S PR+ + + + + +LNC S+T ++ ++P+ WRT
Sbjct: 93 MKTAAASTCPRTCGLCCQTDAYSCPNVAYPRLNCASITLSQCNSPA-WRT 141
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 118 RISVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 17
RI P++L+Q WL R E R+CS H
Sbjct: 27 RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60
>Z81529-7|CAB04292.1| 248|Caenorhabditis elegans Hypothetical
protein F35E8.9 protein.
Length = 248
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 82 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 231
M A S PR+ + + + + +LNC S+T+++ +P+ WRT
Sbjct: 93 MKTAAQSTCPRTCGLCCQTSAYSCPNVAYPRLNCASITASQCISPA-WRT 141
>AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical
protein R11E3.4 protein.
Length = 747
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 171 LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 64
LK A W+ +P+R G +R C SC ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518
>AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical
protein C15F1.5a protein.
Length = 381
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 63 RTCGLSHACWSRIGMTEILVRICEGEN 143
R C ++H C+S + E + CEGEN
Sbjct: 40 RVCPVAH-CYSSLTAPEPMTSTCEGEN 65
>Z74032-6|CAA98468.2| 234|Caenorhabditis elegans Hypothetical
protein F35B12.8 protein.
Length = 234
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 174 IKLFLANEQQIRYTFKMANLNEKK 245
+ +FL E ++ Y+F + NLNE++
Sbjct: 63 LTIFLEQEVEMAYSFGLENLNEQQ 86
>AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical
protein Y41C4A.9 protein.
Length = 577
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 208 LICCSLARNNLIS*N-GPRKYLVFSPSQIRTRISVMPILLQQAWLNPQVRFEHMQT 44
L+C L +++ + G +L+ S + T + I+LQQ W N Q+ F H+ +
Sbjct: 282 LVCSPLGLRMILNGDDGNEAHLISSINM--TIVDRTDIMLQQNWENLQLIFSHLHS 335
>Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical
protein T07D10.3 protein.
Length = 377
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 72 RKYGLNICRQCFREYAHDIGFK 7
R YGL +C C R + + GF+
Sbjct: 234 RAYGLYVCTTCQRRFRDNKGFQ 255
>Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical
protein C35A5.4 protein.
Length = 427
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 109 PRSLSVSARVRIPN-ICV-AHFKKLNCFS 189
PR SV+A +R+PN +C+ + + N +S
Sbjct: 113 PRQTSVNAAIRMPNSVCIQVYHRPYNAYS 141
>Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical
protein ZK455.1 protein.
Length = 887
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 191 SEKQFNFLKWATQIFGILTLADTDKDLGH 105
+ ++FNFLKW ++ F L + + H
Sbjct: 148 NRERFNFLKWGSKAFDNLLIVPPGSGIVH 176
>AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 112 SVMPILLQQAWLNPQVRFEH 53
S M IL Q W +P + FEH
Sbjct: 131 STMHILFSQIWHDPGLSFEH 150
>AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 112 SVMPILLQQAWLNPQVRFEH 53
S M IL Q W +P + FEH
Sbjct: 131 STMHILFSQIWHDPGLSFEH 150
>AL022716-3|CAA18771.1| 272|Caenorhabditis elegans Hypothetical
protein C24F3.2 protein.
Length = 272
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 57 SNRTCGLSHACWSRIGMTEILVRICEGENTKYLR 158
S TC +SH C +++G C G N K++R
Sbjct: 223 SGATCSVSHTCGAKLGTFIASGSKCNGCN-KFVR 255
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 25.0 bits (52), Expect = 7.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 51 CRQCFREYAHDIGFKK 4
C CF+EYAH G +
Sbjct: 330 CAICFKEYAHQAGLSE 345
>Z81449-9|CAB03760.3| 700|Caenorhabditis elegans Hypothetical
protein C46F11.1b protein.
Length = 700
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 245 LFFVQVRHLEGVSNLLLVSEKQFNFLKWATQIFGILTLADTDKDLG 108
+F++ ++HL + +LLV FN L+ A + G+ T A LG
Sbjct: 483 IFYLMLKHLINIKFMLLVPLTIFNGLEQAF-LVGVYTKAFVGCGLG 527
>Z81449-8|CAI70399.1| 705|Caenorhabditis elegans Hypothetical
protein C46F11.1a protein.
Length = 705
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 245 LFFVQVRHLEGVSNLLLVSEKQFNFLKWATQIFGILTLADTDKDLG 108
+F++ ++HL + +LLV FN L+ A + G+ T A LG
Sbjct: 488 IFYLMLKHLINIKFMLLVPLTIFNGLEQAF-LVGVYTKAFVGCGLG 532
>Z35603-2|CAA84674.1| 418|Caenorhabditis elegans Hypothetical
protein T02C12.2 protein.
Length = 418
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 87 RHGLIRKYGLNICRQCFREYAHDIGFK 7
RH L+ + CR CF+E+ + G K
Sbjct: 362 RHELLPNTYTHFCRTCFQEFNYVHGVK 388
>X64415-2|CAA45761.1| 700|Caenorhabditis elegans unc-93 protein.
Length = 700
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 245 LFFVQVRHLEGVSNLLLVSEKQFNFLKWATQIFGILTLADTDKDLG 108
+F++ ++HL + +LLV FN L+ A + G+ T A LG
Sbjct: 483 IFYLMLKHLINIKFMLLVPLTIFNGLEQAF-LVGVYTKAFVGCGLG 527
>X64415-1|CAA45760.1| 705|Caenorhabditis elegans unc-93 protein.
Length = 705
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 245 LFFVQVRHLEGVSNLLLVSEKQFNFLKWATQIFGILTLADTDKDLG 108
+F++ ++HL + +LLV FN L+ A + G+ T A LG
Sbjct: 488 IFYLMLKHLINIKFMLLVPLTIFNGLEQAF-LVGVYTKAFVGCGLG 532
>U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical
protein F13H8.7 protein.
Length = 387
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 117 GSRSCRSCSNRHG-LIRKYGLNICRQC 40
GSR+ R G LI + LN+CRQC
Sbjct: 326 GSRTPALSRVREGVLIAELDLNLCRQC 352
>AF026214-7|AAP68943.1| 640|Caenorhabditis elegans Hypothetical
protein F52H2.1 protein.
Length = 640
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -1
Query: 96 CSNRHGLIRKYGLNICRQCFREYAHD 19
C L G+NI R CF Y H+
Sbjct: 164 CVGYAKLFLNLGVNIVRVCFGHYGHE 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,915,675
Number of Sequences: 27780
Number of extensions: 112952
Number of successful extensions: 324
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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