Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e02
(680 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P09335 Cluster: Low molecular 30 kDa lipoprotein PBMHP-... 440 e-122
UniRef50_Q00802 Cluster: Low molecular mass 30 kDa lipoprotein 1... 213 3e-54
UniRef50_P09334 Cluster: Low molecular 30 kDa lipoprotein PBMHP-... 205 7e-52
UniRef50_P19616 Cluster: Microvitellogenin precursor; n=3; Mandu... 199 6e-50
UniRef50_Q75RW3 Cluster: BmLSP-T; n=2; Bombyx mori|Rep: BmLSP-T ... 187 3e-46
UniRef50_Q2PQU4 Cluster: Putative paralytic peptide-binding prot... 162 6e-39
UniRef50_Q76IB6 Cluster: Growth blocking peptide binding protein... 122 1e-26
UniRef50_A4BGK1 Cluster: Probable glycosyl hydrolase; n=1; Reine... 36 0.91
UniRef50_Q9SH73 Cluster: F22C12.1; n=6; Arabidopsis thaliana|Rep... 35 2.1
UniRef50_Q9M4G1 Cluster: Dof zinc finger protein; n=3; core eudi... 35 2.1
UniRef50_A7TIG1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_Q14PZ1 Cluster: Transposase of is3 family protein; n=10... 33 4.9
UniRef50_Q8I4S6 Cluster: DNA repair protein rhp16, putative; n=2... 33 6.4
UniRef50_Q3M264 Cluster: Putative uncharacterized protein; n=1; ... 33 8.5
UniRef50_Q08S33 Cluster: Hypothetical Membrane Spanning Protein;... 33 8.5
UniRef50_Q55CI1 Cluster: Putative uncharacterized protein; n=2; ... 33 8.5
UniRef50_A4YGN6 Cluster: NADH/Ubiquinone/plastoquinone; n=1; Met... 33 8.5
>UniRef50_P09335 Cluster: Low molecular 30 kDa lipoprotein PBMHP-12
precursor; n=5; Bombyx mori|Rep: Low molecular 30 kDa
lipoprotein PBMHP-12 precursor - Bombyx mori (Silk moth)
Length = 264
Score = 440 bits (1083), Expect = e-122
Identities = 199/207 (96%), Positives = 205/207 (99%)
Frame = -1
Query: 644 AKXQGSIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIY 465
++ QGSIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIY
Sbjct: 58 SQGQGSIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIY 117
Query: 464 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLK 285
RNYNLALKLGSTTNPSNERIAYGDGVDKHT+LVSWKFITLWENNRVYFKAHNTKYNQYLK
Sbjct: 118 RNYNLALKLGSTTNPSNERIAYGDGVDKHTDLVSWKFITLWENNRVYFKAHNTKYNQYLK 177
Query: 284 MSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDALELDTIVNA 105
MSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNR+FNDALEL TIVNA
Sbjct: 178 MSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNRQFNDALELGTIVNA 237
Query: 104 SGDRKAVGHDGEVSGLPEIYSWFITPF 24
SGDRKAVGHDGEV+GLP+IYSWFITPF
Sbjct: 238 SGDRKAVGHDGEVAGLPDIYSWFITPF 264
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -3
Query: 678 DSAVRKSLEYESQGPG 631
DSAVRKSLEYESQG G
Sbjct: 47 DSAVRKSLEYESQGQG 62
>UniRef50_Q00802 Cluster: Low molecular mass 30 kDa lipoprotein 19G1
precursor; n=3; Bombyx mori|Rep: Low molecular mass 30
kDa lipoprotein 19G1 precursor - Bombyx mori (Silk moth)
Length = 256
Score = 213 bits (520), Expect = 3e-54
Identities = 103/204 (50%), Positives = 132/204 (64%)
Frame = -1
Query: 635 QGSIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIYRNY 456
+ ++ NVVN LI + + N MEY Y+LW+ +DIV+ FP+ FRLI A N +KL+Y+
Sbjct: 55 KSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRD 114
Query: 455 NLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMST 276
LAL L + + R YGDG DK + VSWK I LWENN+VYFK NT+ NQYL +
Sbjct: 115 GLALTLSNDVQGDDGRPRYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGV 174
Query: 275 STCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDALELDTIVNASGD 96
T N N D + +G NS DS R QW+ QPAKY+NDVLF+IYNRE++ AL L V SG
Sbjct: 175 GT-NWNG-DHMAFGVNSVDSFRAQWYLQPAKYDNDVLFYIYNREYSKALTLSRTVEPSGH 232
Query: 95 RKAVGHDGEVSGLPEIYSWFITPF 24
R A G++G V G PE Y+W I F
Sbjct: 233 RMAWGYNGRVIGSPEHYAWGIKAF 256
>UniRef50_P09334 Cluster: Low molecular 30 kDa lipoprotein PBMHP-6
precursor; n=2; Bombyx mori|Rep: Low molecular 30 kDa
lipoprotein PBMHP-6 precursor - Bombyx mori (Silk moth)
Length = 256
Score = 205 bits (501), Expect = 7e-52
Identities = 90/204 (44%), Positives = 142/204 (69%)
Frame = -1
Query: 635 QGSIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIYRNY 456
+G +++ V LI + +RNTM++ Y+LW +G++IVK YFP+ FR+I VKLI +
Sbjct: 57 KGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRD 116
Query: 455 NLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMST 276
+ ALKL N + +IA+GD DK ++ VSWKF + ENNRVYFK +T+ QYLK+
Sbjct: 117 HHALKLIDQQN--HNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDN 174
Query: 275 STCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDALELDTIVNASGD 96
+ + + DR++YG ++AD+ + W+ +P+ YE+DV+FF+YNRE+N + LD + A+ D
Sbjct: 175 TKGSSD--DRIIYGDSTADTFKHHWYLEPSMYESDVMFFVYNREYNSVMTLDEDMAANED 232
Query: 95 RKAVGHDGEVSGLPEIYSWFITPF 24
R+A+GH GEVSG P++++W+I P+
Sbjct: 233 REALGHSGEVSGYPQLFAWYIVPY 256
>UniRef50_P19616 Cluster: Microvitellogenin precursor; n=3; Manduca
sexta|Rep: Microvitellogenin precursor - Manduca sexta
(Tobacco hawkmoth) (Tobacco hornworm)
Length = 249
Score = 199 bits (485), Expect = 6e-50
Identities = 92/204 (45%), Positives = 134/204 (65%)
Frame = -1
Query: 635 QGSIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIYRNY 456
+G I+ VN LI D +RNTMEY Y+LW +DIVK+ FP+ FR+++ + +KLI +
Sbjct: 48 KGDIITEAVNRLIRDSQRNTMEYAYQLWSLEARDIVKERFPIQFRMMLGEHSIKLINKRD 107
Query: 455 NLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMST 276
NLA+KLG T+ S +RIAYG DK ++ V+WKF+ L E+ RVYFK N + QYLK+
Sbjct: 108 NLAMKLGVATDNSGDRIAYGAADDKTSDRVAWKFVPLSEDKRVYFKILNVQRGQYLKLGV 167
Query: 275 STCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDALELDTIVNASGD 96
T + + + Y + AD+ R QW+ QPAK + +++FFI NRE+N AL+L V++ GD
Sbjct: 168 ETDSDG--EHMAYASSGADTFRHQWYLQPAKADGNLVFFIVNREYNHALKLGRSVDSMGD 225
Query: 95 RKAVGHDGEVSGLPEIYSWFITPF 24
R+ GH+G V G PE++ W + F
Sbjct: 226 RQVWGHNGNVIGNPELFGWSVVAF 249
>UniRef50_Q75RW3 Cluster: BmLSP-T; n=2; Bombyx mori|Rep: BmLSP-T -
Bombyx mori (Silk moth)
Length = 267
Score = 187 bits (455), Expect = 3e-46
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 2/208 (0%)
Frame = -1
Query: 647 RAKXQGSIVQNVVNNLIIDKRRNTMEYCYKLW--VGNGQDIVKKYFPLSFRLIMAGNYVK 474
+ + G + +VN LI + +RN + YKLW + Q+IVK+YFP+ FR I + N VK
Sbjct: 58 KRRSSGRYITIIVNRLIRENKRNICDLAYKLWDYMDESQEIVKEYFPVIFRQIFSENSVK 117
Query: 473 LIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQ 294
+I + NLA+KLG + N+R+AYGD DK ++ V+WK I LW++NRVYFK + NQ
Sbjct: 118 IINKRDNLAIKLGDALDSDNDRVAYGDANDKTSDNVAWKLIPLWDDNRVYFKIFSVHRNQ 177
Query: 293 YLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDALELDTI 114
++ + + D VYG + AD+ R QW+ P + EN VLF+IYNR+++ AL+L
Sbjct: 178 IFEIRHTYLTVD-NDHGVYGDDRADTHRHQWYLNPVELENQVLFYIYNRQYDQALKLGRN 236
Query: 113 VNASGDRKAVGHDGEVSGLPEIYSWFIT 30
V++ GDR+A V G PE+Y+W I+
Sbjct: 237 VDSDGDRRAYSSSSSVEGQPELYAWSIS 264
>UniRef50_Q2PQU4 Cluster: Putative paralytic peptide-binding
protein; n=1; Bombyx mori|Rep: Putative paralytic
peptide-binding protein - Bombyx mori (Silk moth)
Length = 436
Score = 162 bits (394), Expect = 6e-39
Identities = 81/205 (39%), Positives = 118/205 (57%), Gaps = 1/205 (0%)
Frame = -1
Query: 635 QGS-IVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIYRN 459
QGS + ++VV+ L+ +N M + YKLW +DIV+ YFP F+LI+ +KLI +
Sbjct: 233 QGSGVCRDVVSRLVSQGIKNAMSFAYKLWHEGHKDIVEDYFPSEFQLILDQKRIKLIGNH 292
Query: 458 YNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMS 279
YN ALKL + + +R+ +GDG D + VSW+ I+LWENN V FK NT++ YLK+
Sbjct: 293 YNQALKLDANVDRYKDRLTWGDGKDYTSYRVSWRLISLWENNNVIFKILNTEHEMYLKLD 352
Query: 278 TSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDALELDTIVNASG 99
+ DR +G N + R W+ P K + LF I NRE+ L+LD V+ G
Sbjct: 353 VNVDRYG--DRKTWGSNDSSEKRHTWYLYPVKVGDQQLFLIENREYRQGLKLDANVDRYG 410
Query: 98 DRKAVGHDGEVSGLPEIYSWFITPF 24
DR G++G V+ PE Y + I P+
Sbjct: 411 DRLVWGNNGTVADNPEYYGFIIQPW 435
>UniRef50_Q76IB6 Cluster: Growth blocking peptide binding protein;
n=1; Mythimna separata|Rep: Growth blocking peptide
binding protein - Pseudaletia separata (Oriental
armyworm) (Mythimna separata)
Length = 430
Score = 122 bits (293), Expect = 1e-26
Identities = 64/199 (32%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Frame = -1
Query: 614 VVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIYRNYNLALKLG 435
+V L+ R M + YKLW G ++IV+ +FP +F+ I + V ++ + Y LKL
Sbjct: 232 IVTRLMTAFPRKLMSFAYKLWHGGAKEIVRNHFPKAFQHIFNEDAVTIVNKQYQQPLKLD 291
Query: 434 STTNPSNERIAYGDGVD-KHT-ELVSWKFITLWENNRVYFKAHNTKYNQYLKMSTSTCNC 261
T+ N+R+A+GD K T E +SWK + +W + + FK +N N YLK+ S +
Sbjct: 292 VNTDSMNDRLAWGDHNQCKITSERLSWKILPMWNRDGLTFKLYNVHRNMYLKLDASVDSM 351
Query: 260 NARDRVVYGGNSADSTREQWFFQP--AKYENDVLFFIYNREFNDALELDTIVNASGDRKA 87
DR +G N+++ R +++ +P + + ++FFI N ++ L+LD + GDR
Sbjct: 352 G--DRQAWGSNNSNEDRHRYYLEPMISPHNGTLVFFIINYKYGQGLKLDASTDDIGDRLL 409
Query: 86 VGHDGEVSGLPEIYSWFIT 30
GH+G V E + W I+
Sbjct: 410 WGHNGTVYNEYERFRWIIS 428
>UniRef50_A4BGK1 Cluster: Probable glycosyl hydrolase; n=1; Reinekea
sp. MED297|Rep: Probable glycosyl hydrolase - Reinekea
sp. MED297
Length = 846
Score = 35.9 bits (79), Expect = 0.91
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Frame = -1
Query: 398 GDGVDKHTELVSWKFI---TLW-----ENNRVYFKAHNTKYNQYLKMSTSTCNCNARDRV 243
G GV + + V +F T W + N+ Y++ NT Y Q+L+MS + N +
Sbjct: 563 GSGVGNNAQAVDQRFTGGKTRWTLRPVQGNQGYYRIENTFYQQWLQMSDVSDATNGQPNA 622
Query: 242 VYGGNS-----ADSTREQWFFQPAKYENDVLFF-IYNREFNDALELDTIVNASGD 96
V G++ D+T + Q K D +F + N+ F L++ ++++ G+
Sbjct: 623 VADGDTKAVRLVDTTNTGDWTQWRKVMTDNGYFHLENKHFGYYLQVTSLIDVDGN 677
>UniRef50_Q9SH73 Cluster: F22C12.1; n=6; Arabidopsis thaliana|Rep:
F22C12.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 3290
Score = 34.7 bits (76), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 602 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 504
+++D + EY KL + +G D KYFPL+F
Sbjct: 2227 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 2259
>UniRef50_Q9M4G1 Cluster: Dof zinc finger protein; n=3; core
eudicotyledons|Rep: Dof zinc finger protein - Solanum
tuberosum (Potato)
Length = 324
Score = 34.7 bits (76), Expect = 2.1
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = -1
Query: 488 GNYVKLIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHN 309
GN + ++ + ++GS+TN +N + G G D W+ +L N +Y H
Sbjct: 207 GNGTGALGHHHEMGFQIGSSTNTNNLPVPPGGGSDH-----QWRLPSLAANTNLYPFQHG 261
Query: 308 TKYNQYLKMSTSTCNCNARD 249
T + S + N NA D
Sbjct: 262 TDQGIHESSSVNNNNINAHD 281
>UniRef50_A7TIG1 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 723
Score = 33.9 bits (74), Expect = 3.7
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -1
Query: 359 KFITLWENNRVYFKAHNTKYNQ 294
K TLW+ ++YF+A NTKYN+
Sbjct: 551 KTYTLWQTEQLYFEAQNTKYNK 572
>UniRef50_Q14PZ1 Cluster: Transposase of is3 family protein; n=10;
root|Rep: Transposase of is3 family protein -
Spiroplasma citri
Length = 362
Score = 33.5 bits (73), Expect = 4.9
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Frame = -1
Query: 656 WNTRAKXQGSIVQNVVNNLIIDKRRNTMEY---CYKLWVGNG--QDIVKKYFPLSFRLIM 492
++ +AK + + +N N ++ Y C + GN +D++KKYF F
Sbjct: 11 FDLQAKLKNFLSKNYKNKYYKRIKQKIFSYINLCNDYYNGNFLLKDLIKKYFKNKFSTFY 70
Query: 491 A-GNYVKLIYRNYNLALKLGSTTNPSNERIAYGDGVDK 381
N + + Y+N + A L +T P+N Y D + K
Sbjct: 71 YWANKILIAYKNNDFAELLLKSTIPNNINYQYSDDIRK 108
>UniRef50_Q8I4S6 Cluster: DNA repair protein rhp16, putative; n=2;
Plasmodium|Rep: DNA repair protein rhp16, putative -
Plasmodium falciparum (isolate 3D7)
Length = 1647
Score = 33.1 bits (72), Expect = 6.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 599 IIDKRRNTMEYCYKLWVGNGQDIVKKYF 516
I++K + EYC +L++ N DI KKYF
Sbjct: 505 IVNKHKQPCEYCGRLYLPNNLDIHKKYF 532
>UniRef50_Q3M264 Cluster: Putative uncharacterized protein; n=1;
Anabaena variabilis ATCC 29413|Rep: Putative
uncharacterized protein - Anabaena variabilis (strain
ATCC 29413 / PCC 7937)
Length = 310
Score = 32.7 bits (71), Expect = 8.5
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = -1
Query: 530 VKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGSTTNPSNERIAYGD-GVDKHTELVSWKF 354
+K Y+ R++ + Y I + K+G T P ER+A + + H V+ K
Sbjct: 178 LKLYYAQVKRILSSTLYFLEIISDKGTFYKIGVTARPVIERVAEVERDLVPHYGTVAIKV 237
Query: 353 ITLWE---NNRVYFKAHNTKYNQYLKMSTSTCNCNARD 249
+ W N +YFK K+N +++ T N A D
Sbjct: 238 LGSWAHRGNIELYFKHRYQKFNYPIEILTEYFNFTAED 275
>UniRef50_Q08S33 Cluster: Hypothetical Membrane Spanning Protein;
n=1; Stigmatella aurantiaca DW4/3-1|Rep: Hypothetical
Membrane Spanning Protein - Stigmatella aurantiaca
DW4/3-1
Length = 267
Score = 32.7 bits (71), Expect = 8.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 166 RTSFSYLAGWKNHCSLVLSALLPPYTTRSRALQLQVDVLIFKYW 297
+ ++S + GW + L L+ PP TTR A+ + F YW
Sbjct: 91 KVTYSGITGWASGTYLNLATSTPPSTTRDSAIVRAQSAMGFSYW 134
>UniRef50_Q55CI1 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1074
Score = 32.7 bits (71), Expect = 8.5
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Frame = -1
Query: 620 QNVVNNLIIDKRRNTM-EYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIYRNYNLAL 444
Q+VV NL+ + + + Y +K G + + + +I ++I+ + + L
Sbjct: 116 QSVVTNLVTETTQPILVSYSFKRLKGKNSNYL-----FTANIISKNGVKRIIFDDIDYGL 170
Query: 443 KL---GSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMSTS 273
K GS N E I Y + + ++S+ ++ENN YF+ Y +L
Sbjct: 171 KTLVSGSNKNGVYE-IIYTPSQNSFSGIISFLCYDIYENNFYYFQDQIVSYEPFLVFKVP 229
Query: 272 TC--NCN 258
C NC+
Sbjct: 230 DCLSNCS 236
>UniRef50_A4YGN6 Cluster: NADH/Ubiquinone/plastoquinone; n=1;
Metallosphaera sedula DSM 5348|Rep:
NADH/Ubiquinone/plastoquinone - Metallosphaera sedula
DSM 5348
Length = 570
Score = 32.7 bits (71), Expect = 8.5
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 175 FSYLA-GWKNHCSLVLSALLPPYTTRSRALQLQVDVLIFKYWLYLVLWALKYTLLFSHKV 351
F Y + G N+ L+L ALL T++ +L+ D+ ++ L L+ W LK++ FS
Sbjct: 491 FRYTSFGMANNVRLMLRALL---RTKTGSLETSADIF-WQAMLVLIRWYLKFSRTFSRSF 546
Query: 352 MNFQL 366
MN L
Sbjct: 547 MNGSL 551
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,005,810
Number of Sequences: 1657284
Number of extensions: 11995217
Number of successful extensions: 37367
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 36010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37343
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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