Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e02
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0904 + 22455315-22455475,22456917-22457412                       30   2.0  
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    29   4.5  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   7.9  

>08_02_0904 + 22455315-22455475,22456917-22457412
          Length = 218

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 537 LSVADPQLVAVLHGVPSLVNDQIVNYILNDAALXLGSRIPSS 662
           +S+ + +L   LH  PSL ND+  + + N  AL LGS  P +
Sbjct: 146 ISIEETELTEQLHSPPSLANDE-NSAVYNAPALQLGSCDPKT 186


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 493 MMSLKLNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 600
           MM L + GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 257 ARDRVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNREFND 135
           A  +  Y G++A   R  + W      Y  DVL F YN+E++D
Sbjct: 39  AGGKTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHD 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,843
Number of Sequences: 37544
Number of extensions: 330052
Number of successful extensions: 933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)