Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12e01
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   4.2  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   4.2  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   9.7  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    25   9.7  

>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 406 SKLLYFNWLLWIIKFGLQ*WFK 471
           SK+ YFNWL + + F    W+K
Sbjct: 245 SKIFYFNWLGFFVVFWNPYWYK 266


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 75   LATSNFMNFFGNYIQFILKH*RILIICLHKF*N*QLSNNKLNASYLL---KVGRIF 233
            L++SN+   F N IQ  +    +  + +HK     L+   +N +  +   + G++F
Sbjct: 1787 LSSSNYAELFSNQIQLFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLF 1842


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 267 GLTKSKLIIFYKKYDQLLVNN 205
           GLT  KL  + K+YD ++ NN
Sbjct: 100 GLTLFKLYFYNKRYDMVITNN 120


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 549 RSGDGTLGESEEPETNSKQHFD*NYLLEPSL*TKLDNPK 433
           RSG G   + +EPE+  K++ + +YL + ++  K   PK
Sbjct: 167 RSGIGIRVKRQEPESLKKENNNSDYLPKSAMKQKKGGPK 205


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 521 RKNPKLIQNNILTKTTYLNHHCKPNLIIQSNQLKYNSF 408
           +KN K   N  + K    N   K NL+ + ++L  NSF
Sbjct: 129 KKNSKYEANAAINKAVNENFGSKENLLSKIHELASNSF 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,767
Number of Sequences: 5004
Number of extensions: 44795
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)