Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12e01
(664 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062303-1|AAH62303.1| 359|Homo sapiens stearoyl-CoA desaturase... 39 0.014
BC048971-1|AAH48971.1| 134|Homo sapiens SCD5 protein protein. 39 0.014
BC005807-1|AAH05807.1| 355|Homo sapiens SCD protein protein. 39 0.014
AL831891-1|CAD38567.1| 160|Homo sapiens hypothetical protein pr... 39 0.014
AL139819-4|CAH72824.1| 359|Homo sapiens stearoyl-CoA desaturase... 39 0.014
AK222862-1|BAD96582.1| 359|Homo sapiens stearoyl-CoA desaturase... 39 0.014
AF389338-1|AAP31443.1| 330|Homo sapiens acyl-CoA-desaturase pro... 39 0.014
AF097514-1|AAD29870.1| 359|Homo sapiens stearoyl-CoA desaturase... 39 0.014
AB208982-1|BAD92219.1| 366|Homo sapiens stearoyl-CoA desaturase... 39 0.014
AB032261-1|BAA93510.1| 359|Homo sapiens stearoyl-CoA desaturase... 39 0.014
Y13647-1|CAA73998.1| 359|Homo sapiens stearoyl CoA desaturase p... 39 0.018
>BC062303-1|AAH62303.1| 359|Homo sapiens stearoyl-CoA desaturase
(delta-9-desaturase) protein.
Length = 359
Score = 39.1 bits (87), Expect = 0.014
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 648 INVSTNFIDFFAKIGWAYDLKAATSSMIENRAKRSGDG 535
IN +T FID A +G AYD K + + I R KR+GDG
Sbjct: 317 INFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDG 354
>BC048971-1|AAH48971.1| 134|Homo sapiens SCD5 protein protein.
Length = 134
Score = 39.1 bits (87), Expect = 0.014
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 663 SELG-RINVSTNFIDFFAKIGWAYDLKAATSSMIENRAKRSGDGT 532
SE G N +T FIDF +G A D K AT MIE R R+GD +
Sbjct: 89 SEFGLNFNPTTWFIDFMCWLGLATDRKRATKPMIEARKARTGDSS 133
>BC005807-1|AAH05807.1| 355|Homo sapiens SCD protein protein.
Length = 355
Score = 39.1 bits (87), Expect = 0.014
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 648 INVSTNFIDFFAKIGWAYDLKAATSSMIENRAKRSGDG 535
IN +T FID A +G AYD K + + I R KR+GDG
Sbjct: 317 INFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDG 354
>AL831891-1|CAD38567.1| 160|Homo sapiens hypothetical protein
protein.
Length = 160
Score = 39.1 bits (87), Expect = 0.014
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 663 SELG-RINVSTNFIDFFAKIGWAYDLKAATSSMIENRAKRSGDGT 532
SE G N +T FIDF +G A D K AT MIE R R+GD +
Sbjct: 115 SEFGLNFNPTTWFIDFMCWLGLATDRKRATKPMIEARKARTGDSS 159
>AL139819-4|CAH72824.1| 359|Homo sapiens stearoyl-CoA desaturase
(delta-9-desaturase) protein.
Length = 359
Score = 39.1 bits (87), Expect = 0.014
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 648 INVSTNFIDFFAKIGWAYDLKAATSSMIENRAKRSGDG 535
IN +T FID A +G AYD K + + I R KR+GDG
Sbjct: 317 INFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDG 354
>AK222862-1|BAD96582.1| 359|Homo sapiens stearoyl-CoA desaturase
variant protein.
Length = 359
Score = 39.1 bits (87), Expect = 0.014
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 648 INVSTNFIDFFAKIGWAYDLKAATSSMIENRAKRSGDG 535
IN +T FID A +G AYD K + + I R KR+GDG
Sbjct: 317 INFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDG 354
>AF389338-1|AAP31443.1| 330|Homo sapiens acyl-CoA-desaturase
protein.
Length = 330
Score = 39.1 bits (87), Expect = 0.014
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 663 SELG-RINVSTNFIDFFAKIGWAYDLKAATSSMIENRAKRSGDGT 532
SE G N +T FIDF +G A D K AT MIE R R+GD +
Sbjct: 285 SEFGLNFNPTTWFIDFMCWLGLATDRKRATKPMIEARKARTGDSS 329
>AF097514-1|AAD29870.1| 359|Homo sapiens stearoyl-CoA desaturase
protein.
Length = 359
Score = 39.1 bits (87), Expect = 0.014
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 648 INVSTNFIDFFAKIGWAYDLKAATSSMIENRAKRSGDG 535
IN +T FID A +G AYD K + + I R KR+GDG
Sbjct: 317 INFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDG 354
>AB208982-1|BAD92219.1| 366|Homo sapiens stearoyl-CoA desaturase
variant protein.
Length = 366
Score = 39.1 bits (87), Expect = 0.014
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 648 INVSTNFIDFFAKIGWAYDLKAATSSMIENRAKRSGDG 535
IN +T FID A +G AYD K + + I R KR+GDG
Sbjct: 324 INFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDG 361
>AB032261-1|BAA93510.1| 359|Homo sapiens stearoyl-CoA desaturase
protein.
Length = 359
Score = 39.1 bits (87), Expect = 0.014
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 648 INVSTNFIDFFAKIGWAYDLKAATSSMIENRAKRSGDG 535
IN +T FID A +G AYD K + + I R KR+GDG
Sbjct: 317 INFTTFFIDCMAALGLAYDRKKVSKAAILARIKRTGDG 354
>Y13647-1|CAA73998.1| 359|Homo sapiens stearoyl CoA desaturase
protein.
Length = 359
Score = 38.7 bits (86), Expect = 0.018
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = -2
Query: 648 INVSTNFIDFFAKIGWAYDLKAATSSMIENRAKRSGDG 535
IN +T FID+ A +G YD K + + I R KR+GDG
Sbjct: 317 INFNTFFIDWMAALGLTYDRKKVSKAAILARIKRTGDG 354
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,156,257
Number of Sequences: 237096
Number of extensions: 1290211
Number of successful extensions: 1645
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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