Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d23
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   3.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.2  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    26   5.6  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    25   7.4  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   9.8  

>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -1

Query: 213 IGLPQ----WLPHNAVLRLPHPTTSRRAH*VVSPPGW 115
           + LPQ    WL  N V+ LPH   S  ++ V SP  +
Sbjct: 87  VSLPQSYDPWLDANGVVPLPHDVASHPSYMVQSPTSY 123


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -3

Query: 226  PTAGHRPSPMAST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPSVASIR 71
            P+ G  P P  ST   P P+ S   PP  +         AP S  PSV++ R
Sbjct: 1203 PSVGVPPVPPPST-APPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPR 1253


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 112 PPTRWTDDLVRTAGSRWMRKAEDRIMWKPLGKAYVQQWADK 234
           P   W DD+  T  + W RK  D I  +      V +W  K
Sbjct: 496 PRREWGDDIPTTKEAFWYRKLFDEIFPRQCADT-VMRWVPK 535


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 624 VCYRSFCNYFASHPYVKTKRTKEEDNV 544
           +CYR++CN+ A    ++  R    +N+
Sbjct: 149 LCYRAYCNFRAIQGSIQLARVMSIENI 175


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = -3

Query: 181 GPPPSASNDF------PPCALSRQSTWLEDAPRSLYPSVASIRGLSSPTWRITMDTYN*S 20
           G PP A N        P  +L+   +W E   + ++     +R   S   R+ M+T +  
Sbjct: 332 GRPPGARNKIKRLRSEPSVSLTLSISWYERFEKLMHAQNTMLRSAFSHVARLPMETVSQL 391

Query: 19  IIHY 8
           + HY
Sbjct: 392 LSHY 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,618
Number of Sequences: 5004
Number of extensions: 55497
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)