Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d23
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0164 - 6066744-6067637                                           30   1.9  
10_01_0249 - 2601376-2601547,2611800-2612464,2612549-2613055           29   2.5  
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808...    28   5.8  
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    28   5.8  
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167...    28   5.8  
02_04_0468 - 23172561-23174201                                         28   5.8  
11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22...    28   7.7  
03_06_0613 - 35090377-35090478,35090686-35090839,35090925-350910...    28   7.7  

>03_02_0164 - 6066744-6067637
          Length = 297

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -3

Query: 229 LPTAGHRPSPMAST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPSVASIRGLSS 59
           LP    RP PMA+     PP  + +  P A+S  S +  D PR+    VAS    SS
Sbjct: 217 LPAGLWRPGPMAA-----PPLLAGERRPVAVSTSSVFRGDEPRASASLVASQTASSS 268


>10_01_0249 - 2601376-2601547,2611800-2612464,2612549-2613055
          Length = 447

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +2

Query: 383 FSELMLYRYAYVKRFVLNPMAVIKQKMPLLQ*AFYQNFSSYIVILCTRDASHDGTLS 553
           + EL  +R+A ++  V   + V+K++ P+L+ A +    + + I       H+  LS
Sbjct: 282 YKELFNHRHAVLRNHVERTLGVVKKRFPILKVATFHKIKNQVKIPVAAAVFHNIILS 338


>10_08_0814 -
           20779400-20779487,20779780-20780030,20780528-20780812,
           20781563-20782008,20782095-20782485
          Length = 486

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 238 SLYLPTAGHRPSPMAST*CGPPPSASNDFPP 146
           SL  P A   PSP + +   PPPSAS+  PP
Sbjct: 34  SLTRPRASSSPSPASPS--PPPPSASHPAPP 62


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 103 VGRPPTRWTDDLVRTAGSRWMRKAEDRIMWKPLG 204
           VG     WTD+  +T  S+ M   +D + W   G
Sbjct: 719 VGEMEMVWTDEPSKTRSSKTMNSKDDSVRWPEFG 752


>05_05_0362 +
           24415257-24415481,24415585-24415835,24416659-24416755,
           24417272-24417820,24418029-24418482,24418747-24418860,
           24418940-24419023,24419499-24420067
          Length = 780

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +2

Query: 383 FSELMLYRYAYVKRFVLNPMAVIKQKMPLLQ*AFYQNFSSYIVI 514
           + EL  +R+A ++  V   + V+K++ P+L+ A +    + + I
Sbjct: 444 YKELFNHRHAVLRNHVERTLGVVKKRFPILKVATFHKIENQVKI 487


>02_04_0468 - 23172561-23174201
          Length = 546

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 94  TRNVGRPPTRWTDDLVRTAGSRWMR 168
           T  +GR P  W DD       RWMR
Sbjct: 409 TYAIGRDPASWGDDAAAFRPERWMR 433


>11_01_0029 +
           226459-226973,227053-227424,227533-227688,229513-229595,
           229665-229728,230209-230596
          Length = 525

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = -3

Query: 208 PSPMAST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPSVASIRGLSSPTWRITMDT 32
           PS  A+T   PPP   +  PP + S  S  L   P  L+   +S R L S   R  + T
Sbjct: 10  PSTTATTTTSPPPPPPSTPPPASSSSSS--LAKLPLRLHSLASSSRSLLSALRRSPVTT 66


>03_06_0613 -
           35090377-35090478,35090686-35090839,35090925-35091004,
           35091191-35091340,35091920-35092045,35096500-35096916
          Length = 342

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 146 RREV-VGCGRRRTALCGSHWGRPMSSSGQIK 235
           RR +  GC + + +L G  W +P+ SSG+IK
Sbjct: 292 RRHIRTGCAKGQESLVG--WAKPLLSSGEIK 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,666,808
Number of Sequences: 37544
Number of extensions: 386864
Number of successful extensions: 1086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)