Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d23
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 43 2e-04
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 43 2e-04
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 42 3e-04
Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z92781-2|CAB07181.2| 397|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81128-9|CAC42344.1| 239|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Frame = +1
Query: 52 RWGRKVLEWRPRMGTRNVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKPLG 204
RW + +W PR R VGRPP RW D L + +R W +A+DR WK +
Sbjct: 136 RWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKAWKAVI 195
Query: 205 KAYVQQWAD 231
+A ++ D
Sbjct: 196 RAAGEERID 204
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +1
Query: 52 RWGRKVLEWRPRMGTRNVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMW 192
RW + EWRP R VGRPP RWTD L + +R W A+DR W
Sbjct: 1000 RWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQW 1055
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +1
Query: 52 RWGRKVLEWRPRMGTRNVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMW 192
RW + EWRP R VGRPP RWTD L + +R W A+DR W
Sbjct: 739 RWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQW 794
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +1
Query: 52 RWGRKVLEWRPRMGTRNVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMW 192
RW + EWRP R VGRPP RWTD L + +R W A+DR W
Sbjct: 825 RWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKEW 880
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +1
Query: 52 RWGRKVLEWRPRMGTRNVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMW 192
RW + EWRP R VGRPP RWTD L + +R W A+DR W
Sbjct: 351 RWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKEW 406
>Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical
protein C07A9.10 protein.
Length = 254
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Frame = +1
Query: 97 RNVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWK 195
R VG+PP RWTD L + +R W +A+DR WK
Sbjct: 15 RPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWK 56
>Z92781-2|CAB07181.2| 397|Caenorhabditis elegans Hypothetical
protein F09C3.3 protein.
Length = 397
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 301 SAEFSFRW*ERHEINDICFRDASHIVLVQ-RTYVI 402
S E+S R+ RHEI+D+ RD IV + R Y++
Sbjct: 200 SIEYSERFISRHEIHDLLARDLHRIVFLDWRPYLL 234
>Z81128-9|CAC42344.1| 239|Caenorhabditis elegans Hypothetical
protein T23D8.9b protein.
Length = 239
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 178 PPPSASNDFPPCALS--RQSTWLEDAPRSLYPSVASIRGLSSP 56
PPPS P ALS +Q + R LY S + RG ++P
Sbjct: 60 PPPSQQQQMTPQALSTQQQQQVQQQQQRQLYSSPSPSRGPAAP 102
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 178 PPPSASNDFPPCALS--RQSTWLEDAPRSLYPSVASIRGLSSP 56
PPPS P ALS +Q + R LY S + RG ++P
Sbjct: 60 PPPSQQQQMTPQALSTQQQQQVQQQQQRQLYSSPSPSRGPAAP 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,022,807
Number of Sequences: 27780
Number of extensions: 320174
Number of successful extensions: 769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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