Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d20
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 29 0.73
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 26 5.2
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 5.2
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 6.8
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 6.8
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 6.8
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 25 6.8
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 25 6.8
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 6.8
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 9.0
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 9.0
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 28.7 bits (61), Expect = 0.73
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = -3
Query: 628 IQNVVNNLIIDKSRNTMEYCYKLWVGNGQHIVRKYFPYNFRLIMAGNFVKLIYRNYNLA 452
I V+N I+D+ + ++C ++W G +R ++ N ++ K IY + A
Sbjct: 249 ISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRRA 306
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -3
Query: 193 KYENDVLFFIYNREYNDALKLGRIVDASGD 104
+ NDV + ++++ N+ K+G++VDA G+
Sbjct: 339 RVNNDVEAYQWSQKENEWKKIGQVVDAVGN 368
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 588 GTPWSTATSCGSATDSTLSESTSP 517
GT A S GSAT T SE T+P
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAP 950
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 580 MEYCYKLWVGNGQHIVRKYFPY 515
+EYC +L V G H++ + + Y
Sbjct: 140 LEYCLRLLVNYGDHVLTEKYTY 161
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 494 GHDESKVIGEVLSDNVLSVADPQLVAVLHGVPTLVNDQ 607
G++E +IG + + + + L+ V GVPTL+ Q
Sbjct: 1013 GNEEKPIIGGIEFSSGMGLLHTALLGVYAGVPTLLIKQ 1050
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.4 bits (53), Expect = 6.8
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +3
Query: 201 WRNHCSLVVSAVLVPNITRS*VLQSVVELSFKYWLYLVLWILKYTLLFSHKVMNFQLMRS 380
+RNH SL S P S S ++ +Y L L W YTL++ L+R
Sbjct: 724 YRNHNSLG-SISQEPYRWESVAESSRCAMNIRYSL-LPYW---YTLMYEASSQGLPLIRP 778
Query: 381 LFFSLPS 401
LFF P+
Sbjct: 779 LFFEFPN 785
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 628 IQNVVNNLIIDKSRNTMEYCYKLWVGNGQHIVR 530
++++ NL I + N +EY LW NG I +
Sbjct: 448 LKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 33 KGVTNQEKMSGRPATSPSCPNAIRSPE 113
K +++ + RP+T PSCPNA SP+
Sbjct: 291 KVLSHCSPIDARPST-PSCPNASISPK 316
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 361 FITLWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGT 239
F+ ++E N + H+ K+N+Y + S N RV+ GT
Sbjct: 735 FLRVYEKNTLSEIAHH-KFNEYEMVESIILMNDDKRVVVGT 774
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = -3
Query: 286 SSTTDCNTQDRVIFGTNTADTTREQWFLQPTKYENDVLFFIYNREYN 146
SS C ++ I T + W LQ Y NDV F + R N
Sbjct: 237 SSVNVCKEENFAILEVATPEDATFLWGLQSESYSNDV-FLKFQRIQN 282
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 496 AGNFVKLIYRNYNLALKLGPTLDPANERLAYGDGKEKNSDLISW 365
AG + I+ Y+ +++ P + P NE YG + +L W
Sbjct: 125 AGLYTMGIFDKYDDSVQANPNVPPLNEPFPYGRLPIRGVNLGGW 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,396
Number of Sequences: 5004
Number of extensions: 48669
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -