Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d19
(371 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 71 8e-14
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 26 1.6
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ... 26 2.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 2.2
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 25 2.9
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 5.0
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.0
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 24 6.7
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 6.7
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 8.8
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 24 8.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 24 8.8
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 24 8.8
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 70.5 bits (165), Expect = 8e-14
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = -2
Query: 214 SYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 62
SY+D+ RC K +GE + PC F Y+SLCP EWV++WD QR GTF I
Sbjct: 33 SYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFPAPI 83
Score = 30.7 bits (66), Expect = 0.077
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -3
Query: 252 RFPNQNQTRHCYQ 214
RFPN NQT+HC+Q
Sbjct: 20 RFPNTNQTKHCFQ 32
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 26.2 bits (55), Expect = 1.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 238 KSDEALLPSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDK 104
K DE L SY+D + +R ++ Y+F Y C N+ K
Sbjct: 218 KKDEQLFISYIDIRLPKSIRQKQLLKKYFFS-CYCPRCENDHTTK 261
>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 2.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 215 KLRGLPPLPESSRRKIRTML 156
KLR + P PE+SR+++R M+
Sbjct: 177 KLRDIVPEPENSRKRMRWMI 196
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 2.2
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -3
Query: 204 TSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 67
TST A NT+ + S S P++ ST TS P S V
Sbjct: 2360 TSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405
Score = 25.0 bits (52), Expect = 3.8
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -3
Query: 204 TSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 67
TST A NT+ S S P++ ST TS P S V
Sbjct: 1124 TSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169
Score = 25.0 bits (52), Expect = 3.8
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -3
Query: 204 TSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 67
TST A NT+ S S P++ ST TS P S V
Sbjct: 2768 TSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 2.9
Identities = 22/94 (23%), Positives = 36/94 (38%)
Frame = -3
Query: 351 SIEINPRNG*IIISNMPEMIKSPADLKTAPFDPRFPNQNQTRHCYQVTWTSTVARKFAAK 172
S+ I+P +S+ P + AD+K+ P P N H Y+ T +
Sbjct: 92 SLSISPTKS-AAVSSEPNV---EADVKSLSSTPAAPQLNSPSHSYEPTTFPSTTSITENL 147
Query: 171 NTNHATISRECTGLSAPMSGSTSGTTSAPKAPSP 70
T T S + +S + T+ + PSP
Sbjct: 148 PTIDPTRSTRSSSHIQSLSPESKQTSDGHRPPSP 181
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 5.0
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 293 SNRPPTSKQHLSTHGSLTKIRRGTATKLRGLPPLPESS--RRKIRTMLLFQESV 138
S PP ++++ S + + TA K LPE RRK + + F +V
Sbjct: 210 STAPPRTRRNSSVSSTSASVAASTAPKAASPAVLPEGKPRRRKNNSQMRFCSTV 263
>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 72
Score = 24.6 bits (51), Expect = 5.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 97 CPTCRPTHWGRETCTL 144
CPT PT W +CT+
Sbjct: 3 CPTHGPTTWNPHSCTV 18
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/59 (20%), Positives = 29/59 (49%)
Frame = -3
Query: 249 FPNQNQTRHCYQVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPS 73
F + Q+ + T +++++ + +T+ AT++ +S+ + SAP+A S
Sbjct: 292 FKKKTQSHLPNRTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPSPTPQSAPRAQS 350
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 6.7
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = -3
Query: 231 TRHCYQVTWTSTVARKFAAKNTNHATISRECTGLSAPMS--GSTSGTTSAPKAPS 73
T HCY + + +A N H + E G +S G +SG T + S
Sbjct: 297 TAHCYAMELETQRVWDYAGDNYVHRLLQSETDGKLVELSTDGKSSGWTGSSATES 351
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 129 SAPMSGSTSGTTSAPKAPSPVGFRS 55
+AP + T TT P A SP+ ++S
Sbjct: 433 NAPAAPGTMYTTPLPTANSPIAYQS 457
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 23.8 bits (49), Expect = 8.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 305 CLR*SNRPPTSKQHLSTHGSLTKIRRGTATKLR 207
C+R S P TS + T G +++R+ + K+R
Sbjct: 168 CMRTSQYPVTSGYYYETGGHPSELRKLSIEKIR 200
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 246 PNQNQTRHCYQVTWTSTVARKFAAKN-TNHATI 151
P QN++ + V+W + V+ A+ N T + T+
Sbjct: 157 PKQNRSSEVHVVSWNNKVSHILASGNATEYTTV 189
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 23.8 bits (49), Expect = 8.8
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Frame = -3
Query: 369 IVWLPFSIEINPRNG*IIISNMPEMIKS--------PADLKTAPFDPRFP 244
+ W P+ R G I++ + +M +S D T PFD FP
Sbjct: 261 LFWHPYGSYERLRQGAILVKEVNKMAQSHPSWPVFIAGDFNTEPFDTNFP 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,880
Number of Sequences: 5004
Number of extensions: 33732
Number of successful extensions: 108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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