Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d19
(371 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 67 5e-12
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 66 6e-12
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911 58 2e-09
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832... 46 9e-06
09_06_0272 - 21962495-21962524,21962742-21962918 31 0.38
05_05_0223 - 23406814-23407477,23407597-23407919 31 0.38
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239... 28 2.0
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 28 2.7
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857... 28 2.7
01_06_0002 - 25492807-25494675 27 3.6
06_01_0720 + 5248714-5248967,5250600-5251086 27 4.7
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123... 27 4.7
04_04_0692 - 27307349-27307728,27308381-27308546 27 4.7
02_05_0783 + 31723330-31723585,31723683-31723857,31723953-317241... 27 4.7
12_01_0719 - 6344651-6344809,6344872-6345286,6345967-6346133 27 6.2
05_07_0241 + 28609700-28611649 27 6.2
08_02_0643 + 19648114-19648612,19648690-19648787 26 8.2
07_01_0974 + 8211602-8212051 26 8.2
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 26 8.2
06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352 26 8.2
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 26 8.2
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164... 26 8.2
03_05_0237 - 22235757-22236979,22238564-22238567 26 8.2
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 26 8.2
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 66.9 bits (156), Expect = 5e-12
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = -2
Query: 211 YVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAG 68
YV++HRC +GE C F + YRSLCP EWV++W+ QR GTF G
Sbjct: 120 YVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVERWNEQRENGTFPG 167
Score = 35.5 bits (78), Expect = 0.013
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 291 KSPADLKTAPFDPRFPNQNQTRHCY 217
K ++TAP D RFP NQTRHC+
Sbjct: 93 KPEIKIETAPADFRFPTTNQTRHCF 117
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 66.5 bits (155), Expect = 6e-12
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = -2
Query: 211 YVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAG 68
Y+++HRC +GE C F + YRSLCP+EW+++W+ QR GTF G
Sbjct: 206 YIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEWIERWNEQRENGTFPG 253
Score = 35.5 bits (78), Expect = 0.013
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 291 KSPADLKTAPFDPRFPNQNQTRHCY 217
K ++TAP D RFP NQTRHC+
Sbjct: 179 KPEIKIETAPADFRFPTTNQTRHCF 203
>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
Length = 51
Score = 58.4 bits (135), Expect = 2e-09
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = -2
Query: 193 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAG 68
C + +GE + C + + YRSLCP EW+++W QRA GTFAG
Sbjct: 8 CIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAG 49
>04_04_0390 -
24882572-24882577,24882928-24883009,24883089-24883200,
24883411-24883441
Length = 76
Score = 46.0 bits (104), Expect = 9e-06
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -2
Query: 211 YVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 113
Y+++HRC +GE C F + YRSLCP EW
Sbjct: 43 YIEYHRCVNAKGEATADCEKFAKYYRSLCPAEW 75
Score = 37.5 bits (83), Expect = 0.003
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 279 DLKTAPFDPRFPNQNQTRHCY 217
++KTAP D RFP NQTRHC+
Sbjct: 20 EIKTAPADFRFPTTNQTRHCF 40
>09_06_0272 - 21962495-21962524,21962742-21962918
Length = 68
Score = 30.7 bits (66), Expect = 0.38
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 55 GSKSYRRRCLRRAGCPTCRPTHWGRET 135
G +R++ G P CRP HW R T
Sbjct: 11 GGGDFRQKVWSMTGGPYCRPVHWRRNT 37
>05_05_0223 - 23406814-23407477,23407597-23407919
Length = 328
Score = 30.7 bits (66), Expect = 0.38
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 183 FAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPS 73
FA+ N A++S C+G A + TS +S P+AP+
Sbjct: 219 FASSNGGDASVSWPCSGDDAQNNSETSHESSPPEAPA 255
>12_01_0314 -
2395113-2395760,2396151-2396738,2397218-2397252,
2397546-2397632,2397913-2397985,2398648-2398714,
2398795-2398931,2400196-2400217,2400733-2400807,
2402281-2402365,2402605-2403334
Length = 848
Score = 28.3 bits (60), Expect = 2.0
Identities = 23/69 (33%), Positives = 30/69 (43%)
Frame = +1
Query: 58 SKSYRRRCLRRAGCPTCRPTHWGRETCTLS*NSSMVRIFRRELSGNGGSPRNLVAVPRLI 237
S+ RRR LRRA C CR R + T + M R +RR G+ G +
Sbjct: 113 SQRQRRRLLRRAVCAVCR-----RSSTTATRCERMTR-WRRGWKGSNGCCGGGGGGKGMA 166
Query: 238 LVREPWVER 264
VR+ W R
Sbjct: 167 SVRQTWPRR 175
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 180 AAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 67
A K T A + + T +AP S + S +P+APSPV
Sbjct: 39 APKATAPAGPAPKATATAAPSSKAPSPAAPSPEAPSPV 76
>04_02_0017 -
8572400-8572732,8572818-8572919,8573138-8573230,
8573391-8573519,8573781-8574025,8574184-8574453,
8574590-8574752,8575965-8576063
Length = 477
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 7 DLIKTNRNKLKHWERLGSKSYR 72
+L KTNR+K+K+ GS+SY+
Sbjct: 306 ELNKTNRSKVKYHHTTGSRSYK 327
>01_06_0002 - 25492807-25494675
Length = 622
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 127 RETCTLS*NSSMVRIFRRELSGNGGSPRNLVAVPRLILVREP 252
+ TCT + ++ + RR S +G P L + LILV EP
Sbjct: 284 KATCTPVPSFALPLVLRRGRSEHGTRPLQLQTLRNLILVNEP 325
>06_01_0720 + 5248714-5248967,5250600-5251086
Length = 246
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 259 RPTVP*PKSDEALLPSYVDFHRCQ 188
+P VP PK + LLPS VD ++ Q
Sbjct: 113 KPEVPSPKKRKGLLPSSVDKNKSQ 136
>05_01_0178 -
1235546-1235756,1235869-1235945,1236194-1236347,
1237067-1237216,1237363-1237484,1237806-1237910,
1237986-1238213
Length = 348
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -3
Query: 315 ISNMPEMIKSPADLK-TAPFDPRFPNQNQTRHCYQVTWTSTVARKFAAKN 169
IS P ++ + K T P + + N CY+ W + ++ KF A+N
Sbjct: 175 ISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAEN 224
>04_04_0692 - 27307349-27307728,27308381-27308546
Length = 181
Score = 27.1 bits (57), Expect = 4.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 213 VTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPS 73
VT T + R F +T H + T A +SGS +G T K S
Sbjct: 93 VTLTRSGTRYFICGSTGHCGAGMKLTVTVATLSGSAAGGTRLAKPSS 139
>02_05_0783 +
31723330-31723585,31723683-31723857,31723953-31724166,
31724388-31725032,31725199-31725335,31725440-31725554
Length = 513
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -3
Query: 171 NTNHATISRECTGLSAPMSGSTSGTTSA 88
NTN +T+S E T S S S S TTSA
Sbjct: 181 NTNLSTVSNESTTKSILSSVSVSDTTSA 208
>12_01_0719 - 6344651-6344809,6344872-6345286,6345967-6346133
Length = 246
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 163 VRIFRRELSGNGGSPRNLVAVPRLIL 240
VRI R E G SP N+ + PR+I+
Sbjct: 65 VRITRLEKQGTDPSPPNIFSTPRIIV 90
>05_07_0241 + 28609700-28611649
Length = 649
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 127 RETCTLS*NSSMVRIFRRELSGNGGS--PRNLVAVPRLILVREPWVERCCFEVGGRF 291
R TCT + ++ + RR S +G P L ++ LIL+ EP + C E F
Sbjct: 286 RATCTPVPSFALPLVLRRGRSPDGRRRRPLELGSLENLILINEPIYKSCVDEFVAEF 342
>08_02_0643 + 19648114-19648612,19648690-19648787
Length = 198
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
Frame = +1
Query: 67 YRRRCLRR-----AGCPTCRPTH 120
+ RRC+RR CPTC TH
Sbjct: 135 FHRRCVRRWLRVNLACPTCNATH 157
>07_01_0974 + 8211602-8212051
Length = 149
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 138 TGLSAPMSGSTSGTTSAPKAPSPVG 64
T + P GTT+AP APSP G
Sbjct: 70 TNPAPPAVPCNCGTTTAPAAPSPPG 94
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 178 RELSGNGGSPRNLVAVPRLILVREPWVERCCFE 276
R G+GGSP VA R +L V C FE
Sbjct: 500 RRRGGDGGSPDATVAPARSLLKEAIHVVSCAFE 532
>06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352
Length = 563
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 263 LSTHGSLTKIRRGTATKLRGLPPLPESSRRKIRTMLLFQES 141
L +HG R A + R PP + R KIRT +E+
Sbjct: 65 LGSHGGAYSQRAKLALEFRSQPPNDKLKRNKIRTYKEIREN 105
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = -2
Query: 154 YFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI*ILNV 47
+F R ++ L PNEW++ ++ + +G + L++
Sbjct: 879 HFLRGFQQLIPNEWINMFNEHEFQVLISGSLESLDI 914
>04_01_0142 +
1640472-1640611,1641618-1641744,1642233-1642425,
1642793-1643349
Length = 338
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 52 LGSKSYRR-RCLRRAGCPTCRPTHWGRETCTLS*NSSMVRIFRRELSGNGGSPR 210
+G K R C AG P WG + +M RR L GN G+P+
Sbjct: 1 MGGKRERLCHCAHLAGQPPLLTAGWGGRRERARRSHAMPTGRRRSLQGNDGTPK 54
>03_05_0237 - 22235757-22236979,22238564-22238567
Length = 408
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 178 GEKYEPCYYFKRVYRSLCPNEWVDKWD 98
G++Y C Y K + ++ + V+KWD
Sbjct: 220 GDRYLDCAYHKGRFHAVTLHRMVEKWD 246
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 318 IISNMPEMIKSPADLKTAPFDPR--FPNQNQTRHCYQVTWTSTVARKF 181
+ N+P + + PA T +P P + + C Q+TWT+ + +F
Sbjct: 807 LAKNVPTLGEQPAQ-PTESAEPNRIIPRPKERQDCNQLTWTTAPSLQF 853
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,091,439
Number of Sequences: 37544
Number of extensions: 247300
Number of successful extensions: 870
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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