Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d19
(371 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X54473-1|CAA38352.1| 86|Homo sapiens cytochrome oxidase subuni... 73 3e-13
X13923-1|CAA32114.1| 86|Homo sapiens protein ( Human mRNA for ... 73 3e-13
CR542137-1|CAG46934.1| 86|Homo sapiens COX6B protein. 73 3e-13
CR456789-1|CAG33070.1| 86|Homo sapiens COX6B protein. 73 3e-13
BT006945-1|AAP35591.1| 86|Homo sapiens cytochrome c oxidase su... 73 3e-13
BC002478-1|AAH02478.1| 86|Homo sapiens cytochrome c oxidase su... 73 3e-13
BC001015-1|AAH01015.1| 86|Homo sapiens cytochrome c oxidase su... 73 3e-13
AC002115-3|AAB57628.1| 86|Homo sapiens COXG protein. 73 3e-13
BC100902-1|AAI00903.1| 88|Homo sapiens COX6B2 protein protein. 66 3e-11
BC100901-1|AAI00902.1| 88|Homo sapiens cytochrome c oxidase su... 66 3e-11
BC100900-1|AAI00901.1| 88|Homo sapiens cytochrome c oxidase su... 66 3e-11
BC100899-1|AAI00900.1| 88|Homo sapiens cytochrome c oxidase su... 66 3e-11
BC064548-1|AAH64548.1| 88|Homo sapiens cytochrome c oxidase su... 66 3e-11
BC026123-1|AAH26123.3| 88|Homo sapiens cytochrome c oxidase su... 66 3e-11
AY152398-1|AAN46751.1| 88|Homo sapiens cytochrome c oxidase su... 66 3e-11
AL031594-1|CAI21907.1| 108|Homo sapiens protein ( Human DNA seq... 42 6e-04
AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein. 34 0.17
X58139-1|CAA41147.1| 17|Homo sapiens cytochrome-c oxidase prot... 31 1.6
AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein. 30 2.1
AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein. 30 2.1
AK096772-1|BAC04860.1| 577|Homo sapiens protein ( Homo sapiens ... 29 3.6
BC131746-1|AAI31747.1| 599|Homo sapiens DOCK3 protein protein. 29 6.3
AY254099-1|AAP80572.1| 2030|Homo sapiens DOCK3 protein. 29 6.3
AY145303-1|AAN12301.1| 2030|Homo sapiens modifier of cell adhesi... 29 6.3
AK127688-1|BAC87085.1| 129|Homo sapiens protein ( Homo sapiens ... 29 6.3
AB002297-1|BAA20759.1| 1907|Homo sapiens KIAA0299 protein. 29 6.3
BC121793-1|AAI21794.1| 837|Homo sapiens family with sequence si... 28 8.4
BC119814-1|AAI19815.1| 837|Homo sapiens family with sequence si... 28 8.4
BC094786-1|AAH94786.1| 837|Homo sapiens family with sequence si... 28 8.4
AL772411-4|CAH70968.1| 742|Homo sapiens family with sequence si... 28 8.4
AL772411-3|CAH70967.1| 837|Homo sapiens family with sequence si... 28 8.4
AL160006-3|CAI22716.1| 742|Homo sapiens family with sequence si... 28 8.4
AL160006-2|CAI22715.1| 837|Homo sapiens family with sequence si... 28 8.4
AK125054-1|BAC86034.1| 440|Homo sapiens protein ( Homo sapiens ... 28 8.4
AK027649-1|BAB55265.1| 742|Homo sapiens protein ( Homo sapiens ... 28 8.4
AB051548-1|BAB21852.2| 837|Homo sapiens KIAA1761 protein protein. 28 8.4
AB006685-1|BAA23993.1| 254|Homo sapiens AIRE-3 protein. 28 8.4
AB006684-3|BAA23992.1| 254|Homo sapiens AIRE-3 protein. 28 8.4
>X54473-1|CAA38352.1| 86|Homo sapiens cytochrome oxidase subunit
VIb protein.
Length = 86
Score = 72.9 bits (171), Expect = 3e-13
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Frame = -2
Query: 214 SYVDFHRCQKV---RGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 62
+Y+DFHRCQK +G C +++RVY+SLCP WV WD QRAEGTF G+I
Sbjct: 33 NYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI 86
Score = 44.0 bits (99), Expect = 2e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -3
Query: 273 KTAPFDPRFPNQNQTRHCYQ 214
KTAPFD RFPNQNQTR+C+Q
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQ 32
>X13923-1|CAA32114.1| 86|Homo sapiens protein ( Human mRNA for
cytochrome c oxidase subunit VIb (EC 1.9.3.1). ).
Length = 86
Score = 72.9 bits (171), Expect = 3e-13
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Frame = -2
Query: 214 SYVDFHRCQKV---RGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 62
+Y+DFHRCQK +G C +++RVY+SLCP WV WD QRAEGTF G+I
Sbjct: 33 NYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI 86
Score = 44.0 bits (99), Expect = 2e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -3
Query: 273 KTAPFDPRFPNQNQTRHCYQ 214
KTAPFD RFPNQNQTR+C+Q
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQ 32
>CR542137-1|CAG46934.1| 86|Homo sapiens COX6B protein.
Length = 86
Score = 72.9 bits (171), Expect = 3e-13
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Frame = -2
Query: 214 SYVDFHRCQKV---RGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 62
+Y+DFHRCQK +G C +++RVY+SLCP WV WD QRAEGTF G+I
Sbjct: 33 NYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI 86
Score = 44.0 bits (99), Expect = 2e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -3
Query: 273 KTAPFDPRFPNQNQTRHCYQ 214
KTAPFD RFPNQNQTR+C+Q
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQ 32
>CR456789-1|CAG33070.1| 86|Homo sapiens COX6B protein.
Length = 86
Score = 72.9 bits (171), Expect = 3e-13
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Frame = -2
Query: 214 SYVDFHRCQKV---RGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 62
+Y+DFHRCQK +G C +++RVY+SLCP WV WD QRAEGTF G+I
Sbjct: 33 NYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI 86
Score = 44.0 bits (99), Expect = 2e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -3
Query: 273 KTAPFDPRFPNQNQTRHCYQ 214
KTAPFD RFPNQNQTR+C+Q
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQ 32
>BT006945-1|AAP35591.1| 86|Homo sapiens cytochrome c oxidase
subunit VIb protein.
Length = 86
Score = 72.9 bits (171), Expect = 3e-13
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Frame = -2
Query: 214 SYVDFHRCQKV---RGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 62
+Y+DFHRCQK +G C +++RVY+SLCP WV WD QRAEGTF G+I
Sbjct: 33 NYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI 86
Score = 44.0 bits (99), Expect = 2e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -3
Query: 273 KTAPFDPRFPNQNQTRHCYQ 214
KTAPFD RFPNQNQTR+C+Q
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQ 32
>BC002478-1|AAH02478.1| 86|Homo sapiens cytochrome c oxidase
subunit Vib polypeptide 1 (ubiquitous) protein.
Length = 86
Score = 72.9 bits (171), Expect = 3e-13
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Frame = -2
Query: 214 SYVDFHRCQKV---RGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 62
+Y+DFHRCQK +G C +++RVY+SLCP WV WD QRAEGTF G+I
Sbjct: 33 NYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI 86
Score = 44.0 bits (99), Expect = 2e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -3
Query: 273 KTAPFDPRFPNQNQTRHCYQ 214
KTAPFD RFPNQNQTR+C+Q
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQ 32
>BC001015-1|AAH01015.1| 86|Homo sapiens cytochrome c oxidase
subunit Vib polypeptide 1 (ubiquitous) protein.
Length = 86
Score = 72.9 bits (171), Expect = 3e-13
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Frame = -2
Query: 214 SYVDFHRCQKV---RGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 62
+Y+DFHRCQK +G C +++RVY+SLCP WV WD QRAEGTF G+I
Sbjct: 33 NYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI 86
Score = 44.0 bits (99), Expect = 2e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -3
Query: 273 KTAPFDPRFPNQNQTRHCYQ 214
KTAPFD RFPNQNQTR+C+Q
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQ 32
>AC002115-3|AAB57628.1| 86|Homo sapiens COXG protein.
Length = 86
Score = 72.9 bits (171), Expect = 3e-13
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Frame = -2
Query: 214 SYVDFHRCQKV---RGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI 62
+Y+DFHRCQK +G C +++RVY+SLCP WV WD QRAEGTF G+I
Sbjct: 33 NYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEGTFPGKI 86
Score = 44.0 bits (99), Expect = 2e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -3
Query: 273 KTAPFDPRFPNQNQTRHCYQ 214
KTAPFD RFPNQNQTR+C+Q
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQ 32
>BC100902-1|AAI00903.1| 88|Homo sapiens COX6B2 protein protein.
Length = 88
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = -2
Query: 262 FRPTVP*PKSDEALLPSYVDFHRCQKVR---GEKYEPCYYFKRVYRSLCPNEWVDKWDNQ 92
F P P +++D+HRC K R G+ +PC Y+ RVY SLCP WV+ W+ Q
Sbjct: 19 FDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQ 78
Query: 91 RAEGTFAGRI 62
G FAG+I
Sbjct: 79 IKNGIFAGKI 88
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 270 TAPFDPRFPNQNQTRHCYQ 214
T PFDPRFP+QNQ R+CYQ
Sbjct: 16 TPPFDPRFPSQNQIRNCYQ 34
>BC100901-1|AAI00902.1| 88|Homo sapiens cytochrome c oxidase
subunit VIb polypeptide 2 (testis) protein.
Length = 88
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = -2
Query: 262 FRPTVP*PKSDEALLPSYVDFHRCQKVR---GEKYEPCYYFKRVYRSLCPNEWVDKWDNQ 92
F P P +++D+HRC K R G+ +PC Y+ RVY SLCP WV+ W+ Q
Sbjct: 19 FDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQ 78
Query: 91 RAEGTFAGRI 62
G FAG+I
Sbjct: 79 IKNGIFAGKI 88
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 270 TAPFDPRFPNQNQTRHCYQ 214
T PFDPRFP+QNQ R+CYQ
Sbjct: 16 TPPFDPRFPSQNQIRNCYQ 34
>BC100900-1|AAI00901.1| 88|Homo sapiens cytochrome c oxidase
subunit VIb polypeptide 2 (testis) protein.
Length = 88
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = -2
Query: 262 FRPTVP*PKSDEALLPSYVDFHRCQKVR---GEKYEPCYYFKRVYRSLCPNEWVDKWDNQ 92
F P P +++D+HRC K R G+ +PC Y+ RVY SLCP WV+ W+ Q
Sbjct: 19 FDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQ 78
Query: 91 RAEGTFAGRI 62
G FAG+I
Sbjct: 79 IKNGIFAGKI 88
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 270 TAPFDPRFPNQNQTRHCYQ 214
T PFDPRFP+QNQ R+CYQ
Sbjct: 16 TPPFDPRFPSQNQIRNCYQ 34
>BC100899-1|AAI00900.1| 88|Homo sapiens cytochrome c oxidase
subunit VIb polypeptide 2 (testis) protein.
Length = 88
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = -2
Query: 262 FRPTVP*PKSDEALLPSYVDFHRCQKVR---GEKYEPCYYFKRVYRSLCPNEWVDKWDNQ 92
F P P +++D+HRC K R G+ +PC Y+ RVY SLCP WV+ W+ Q
Sbjct: 19 FDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQ 78
Query: 91 RAEGTFAGRI 62
G FAG+I
Sbjct: 79 IKNGIFAGKI 88
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 270 TAPFDPRFPNQNQTRHCYQ 214
T PFDPRFP+QNQ R+CYQ
Sbjct: 16 TPPFDPRFPSQNQIRNCYQ 34
>BC064548-1|AAH64548.1| 88|Homo sapiens cytochrome c oxidase
subunit VIb polypeptide 2 (testis) protein.
Length = 88
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = -2
Query: 262 FRPTVP*PKSDEALLPSYVDFHRCQKVR---GEKYEPCYYFKRVYRSLCPNEWVDKWDNQ 92
F P P +++D+HRC K R G+ +PC Y+ RVY SLCP WV+ W+ Q
Sbjct: 19 FDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQ 78
Query: 91 RAEGTFAGRI 62
G FAG+I
Sbjct: 79 IKNGIFAGKI 88
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 270 TAPFDPRFPNQNQTRHCYQ 214
T PFDPRFP+QNQ R+CYQ
Sbjct: 16 TPPFDPRFPSQNQIRNCYQ 34
>BC026123-1|AAH26123.3| 88|Homo sapiens cytochrome c oxidase
subunit VIb polypeptide 2 (testis) protein.
Length = 88
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = -2
Query: 262 FRPTVP*PKSDEALLPSYVDFHRCQKVR---GEKYEPCYYFKRVYRSLCPNEWVDKWDNQ 92
F P P +++D+HRC K R G+ +PC Y+ RVY SLCP WV+ W+ Q
Sbjct: 19 FDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQ 78
Query: 91 RAEGTFAGRI 62
G FAG+I
Sbjct: 79 IKNGIFAGKI 88
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 270 TAPFDPRFPNQNQTRHCYQ 214
T PFDPRFP+QNQ R+CYQ
Sbjct: 16 TPPFDPRFPSQNQIRNCYQ 34
>AY152398-1|AAN46751.1| 88|Homo sapiens cytochrome c oxidase
subunit VIb testes-specific isoform precursor protein.
Length = 88
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = -2
Query: 262 FRPTVP*PKSDEALLPSYVDFHRCQKVR---GEKYEPCYYFKRVYRSLCPNEWVDKWDNQ 92
F P P +++D+HRC K R G+ +PC Y+ RVY SLCP WV+ W+ Q
Sbjct: 19 FDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQ 78
Query: 91 RAEGTFAGRI 62
G FAG+I
Sbjct: 79 IKNGIFAGKI 88
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 270 TAPFDPRFPNQNQTRHCYQ 214
T PFDPRFP+QNQ R+CYQ
Sbjct: 16 TPPFDPRFPSQNQIRNCYQ 34
>AL031594-1|CAI21907.1| 108|Homo sapiens protein ( Human DNA
sequence from clone RP4-591N18 on chromosome
22q13.1-13.2.33 Contains the C22orf34 gene for
chromosome 22 open reading frame 34. ).
Length = 108
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -2
Query: 211 YVDFHRCQKVR----GEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGR 65
Y+D H +K G C +++ VY+SLCP W WD+ + F GR
Sbjct: 34 YLDLHHFKKAMTAKGGGDVSVCEWYQHVYKSLCPIPWASAWDDHGQKAHFLGR 86
Score = 37.5 bits (83), Expect = 0.014
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -3
Query: 273 KTAPFDPRFPNQNQTRHCYQ 214
+TAPFD RFPNQNQTR+ +Q
Sbjct: 13 RTAPFDRRFPNQNQTRNGWQ 32
>AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein.
Length = 901
Score = 33.9 bits (74), Expect = 0.17
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = -3
Query: 210 TWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPS 73
T T++ + + +T H+T+S T +++P + + +G TS P +PS
Sbjct: 10 TETTSHSTPSFSSSTIHSTVSSSTTAITSPFTTAETGVTSTPSSPS 55
>X58139-1|CAA41147.1| 17|Homo sapiens cytochrome-c oxidase
protein.
Length = 17
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2
Query: 112 VDKWDNQRAEGTFAGRI 62
V WD QRAEGTF G+I
Sbjct: 1 VTDWDEQRAEGTFPGKI 17
>AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 168 TNHATISRECTGLSAPMSGSTSGTTSAPKAPS 73
T ++T+S T +++P + + +G TS P +PS
Sbjct: 1 TIYSTVSSSTTAITSPFTTAETGVTSTPSSPS 32
>AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 168 TNHATISRECTGLSAPMSGSTSGTTSAPKAPS 73
T ++T+S T +++P + + +G TS P +PS
Sbjct: 1 TIYSTVSSSTTAITSPFTTAETGVTSTPSSPS 32
>AK096772-1|BAC04860.1| 577|Homo sapiens protein ( Homo sapiens
cDNA FLJ39453 fis, clone PROST2010046, highly similar to
Homo sapiens secretory mucin MUC6 (MUC6) mRNA. ).
Length = 577
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/74 (28%), Positives = 28/74 (37%)
Frame = -3
Query: 291 KSPADLKTAPFDPRFPNQNQTRHCYQVTWTSTVARKFAAKNTNHATISRECTGLSAPMSG 112
+SP+ TA P + H +VT TST F +T T T S+
Sbjct: 42 QSPSSFSTAKTSTSLPYHTSSTHHPEVTPTSTTNITFKHTSTGTRTPVAHTTSASSSRLP 101
Query: 111 STSGTTSAPKAPSP 70
+ T S P SP
Sbjct: 102 TPFTTHSPPTGSSP 115
>BC131746-1|AAI31747.1| 599|Homo sapiens DOCK3 protein protein.
Length = 599
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 293 SNRPPTSKQHLSTHGSLTKIRRGTATKLRGLPPLPESSRRKIRTMLL 153
S P+S STH + +++ + RG P LP+ R MLL
Sbjct: 533 SQASPSSSSLSSTHSAPSQMITSAPSSARGSPSLPDKYRHAREMMLL 579
>AY254099-1|AAP80572.1| 2030|Homo sapiens DOCK3 protein.
Length = 2030
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 293 SNRPPTSKQHLSTHGSLTKIRRGTATKLRGLPPLPESSRRKIRTMLL 153
S P+S STH + +++ + RG P LP+ R MLL
Sbjct: 1736 SQASPSSSSLSSTHSAPSQMITSAPSSARGSPSLPDKYRHAREMMLL 1782
>AY145303-1|AAN12301.1| 2030|Homo sapiens modifier of cell adhesion
protein.
Length = 2030
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 293 SNRPPTSKQHLSTHGSLTKIRRGTATKLRGLPPLPESSRRKIRTMLL 153
S P+S STH + +++ + RG P LP+ R MLL
Sbjct: 1736 SQASPSSSSLSSTHSAPSQMITSAPSSARGSPSLPDKYRHAREMMLL 1782
>AK127688-1|BAC87085.1| 129|Homo sapiens protein ( Homo sapiens
cDNA FLJ45786 fis, clone NETRP2008488. ).
Length = 129
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 61 KSYRRRCLRRAGCPTCRPTHWGRET 135
K RR+ LR+A CP+ RP G +T
Sbjct: 67 KGNRRKELRQANCPSLRPQRKGADT 91
>AB002297-1|BAA20759.1| 1907|Homo sapiens KIAA0299 protein.
Length = 1907
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 293 SNRPPTSKQHLSTHGSLTKIRRGTATKLRGLPPLPESSRRKIRTMLL 153
S P+S STH + +++ + RG P LP+ R MLL
Sbjct: 1613 SQASPSSSSLSSTHSAPSQMITSAPSSARGSPSLPDKYRHAREMMLL 1659
>BC121793-1|AAI21794.1| 837|Homo sapiens family with sequence
similarity 40, member A protein.
Length = 837
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 272 KQHLSTHGSLTKIRRGTATK--LRGLPPLPESSRRKIRTM 159
K L T G +++ A K + GLPPLPE S + IR M
Sbjct: 292 KTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNM 331
>BC119814-1|AAI19815.1| 837|Homo sapiens family with sequence
similarity 40, member A protein.
Length = 837
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 272 KQHLSTHGSLTKIRRGTATK--LRGLPPLPESSRRKIRTM 159
K L T G +++ A K + GLPPLPE S + IR M
Sbjct: 292 KTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNM 331
>BC094786-1|AAH94786.1| 837|Homo sapiens family with sequence
similarity 40, member A protein.
Length = 837
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 272 KQHLSTHGSLTKIRRGTATK--LRGLPPLPESSRRKIRTM 159
K L T G +++ A K + GLPPLPE S + IR M
Sbjct: 292 KTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNM 331
>AL772411-4|CAH70968.1| 742|Homo sapiens family with sequence
similarity 40, member A protein.
Length = 742
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 272 KQHLSTHGSLTKIRRGTATK--LRGLPPLPESSRRKIRTM 159
K L T G +++ A K + GLPPLPE S + IR M
Sbjct: 197 KTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNM 236
>AL772411-3|CAH70967.1| 837|Homo sapiens family with sequence
similarity 40, member A protein.
Length = 837
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 272 KQHLSTHGSLTKIRRGTATK--LRGLPPLPESSRRKIRTM 159
K L T G +++ A K + GLPPLPE S + IR M
Sbjct: 292 KTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNM 331
>AL160006-3|CAI22716.1| 742|Homo sapiens family with sequence
similarity 40, member A protein.
Length = 742
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 272 KQHLSTHGSLTKIRRGTATK--LRGLPPLPESSRRKIRTM 159
K L T G +++ A K + GLPPLPE S + IR M
Sbjct: 197 KTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNM 236
>AL160006-2|CAI22715.1| 837|Homo sapiens family with sequence
similarity 40, member A protein.
Length = 837
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 272 KQHLSTHGSLTKIRRGTATK--LRGLPPLPESSRRKIRTM 159
K L T G +++ A K + GLPPLPE S + IR M
Sbjct: 292 KTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNM 331
>AK125054-1|BAC86034.1| 440|Homo sapiens protein ( Homo sapiens
cDNA FLJ43064 fis, clone BRTHA3008386. ).
Length = 440
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 272 KQHLSTHGSLTKIRRGTATK--LRGLPPLPESSRRKIRTM 159
K L T G +++ A K + GLPPLPE S + IR M
Sbjct: 28 KTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNM 67
>AK027649-1|BAB55265.1| 742|Homo sapiens protein ( Homo sapiens
cDNA FLJ14743 fis, clone NT2RP3002701. ).
Length = 742
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 272 KQHLSTHGSLTKIRRGTATK--LRGLPPLPESSRRKIRTM 159
K L T G +++ A K + GLPPLPE S + IR M
Sbjct: 197 KTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNM 236
>AB051548-1|BAB21852.2| 837|Homo sapiens KIAA1761 protein protein.
Length = 837
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 272 KQHLSTHGSLTKIRRGTATK--LRGLPPLPESSRRKIRTM 159
K L T G +++ A K + GLPPLPE S + IR M
Sbjct: 292 KTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNM 331
>AB006685-1|BAA23993.1| 254|Homo sapiens AIRE-3 protein.
Length = 254
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -3
Query: 285 PADLKTAPFDPRFPNQNQTRHCYQVTWTSTVARKFA-AKNTNHATISRECTG-LSAPMSG 112
P L++A +PR W V+R + + A + R C G L+AP+
Sbjct: 170 PPGLRSAGEEPRCQGWTPRPCTPYCVWVLRVSRTWLLVRVAGCAEMVRTCCGVLTAPLP- 228
Query: 111 STSGTTSAPKAPSP 70
ST TS P P P
Sbjct: 229 STGAATSQPAPPGP 242
>AB006684-3|BAA23992.1| 254|Homo sapiens AIRE-3 protein.
Length = 254
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -3
Query: 285 PADLKTAPFDPRFPNQNQTRHCYQVTWTSTVARKFA-AKNTNHATISRECTG-LSAPMSG 112
P L++A +PR W V+R + + A + R C G L+AP+
Sbjct: 170 PPGLRSAGEEPRCQGWTPRPCTPYCVWVLRVSRTWLLVRVAGCAEMVRTCCGVLTAPLP- 228
Query: 111 STSGTTSAPKAPSP 70
ST TS P P P
Sbjct: 229 STGAATSQPAPPGP 242
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,546,514
Number of Sequences: 237096
Number of extensions: 1284535
Number of successful extensions: 4205
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 4066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4189
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2421480012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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