Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d19
(371 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical... 67 3e-12
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 30 0.61
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical pr... 28 1.9
AL117195-5|CAB55012.1| 732|Caenorhabditis elegans Hypothetical ... 27 3.2
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 27 3.2
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 27 3.2
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p... 27 4.3
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p... 27 4.3
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 27 5.7
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 26 7.5
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 26 7.5
AF000263-15|AAG00018.1| 416|Caenorhabditis elegans Hypothetical... 26 7.5
AC006627-10|AAK85465.1| 499|Caenorhabditis elegans Hypothetical... 26 7.5
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 26 9.9
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 26 9.9
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 26 9.9
>AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical
protein Y71H2AM.5 protein.
Length = 121
Score = 67.3 bits (157), Expect = 3e-12
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = -2
Query: 211 YVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAGR 65
YVDFHRC ++ G+ Y+PC +F+ VY+ CP W ++WD +EG F +
Sbjct: 70 YVDFHRCNELMGQDYKPCKFFQNVYKDFCPGFWTERWDELLSEGRFPAK 118
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 29.9 bits (64), Expect = 0.61
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = -3
Query: 294 IKSPADLKTAPFDPRFPNQNQTRHCYQVTWTSTVARKFAAKNTNHATISRECTGLSAPMS 115
I++P K+AP PR + +A+K A A S+ + +SAP +
Sbjct: 390 IRAPIPAKSAPAPPRGAPAKAAK-------AEAIAQKKVAGKVQRAAPSKPASAVSAPKA 442
Query: 114 GSTSGTTSAPKAPSPVGFR 58
+ + T+SAP A +P R
Sbjct: 443 TAPASTSSAP-ATAPEASR 460
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 210 TWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVG 64
T +ST+ + +T H T+S+ +G ++P + S +G+T + S G
Sbjct: 1429 TESSTLLSSTISGSTQHTTMSKASSGSTSPSTNSQTGSTVTMGSSSTSG 1477
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 156 TISRECTGLSAPMSGSTSGTTSAPKAPSP 70
+++ E T S SGS+ GT S +PSP
Sbjct: 658 SVATEVTSQSTVPSGSSLGTQSTNSSPSP 686
>Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical
protein F58A4.1 protein.
Length = 254
Score = 28.3 bits (60), Expect = 1.9
Identities = 21/76 (27%), Positives = 30/76 (39%)
Frame = -3
Query: 315 ISNMPEMIKSPADLKTAPFDPRFPNQNQTRHCYQVTWTSTVARKFAAKNTNHATISRECT 136
+S PE + P + P P + + + T TST + + T S T
Sbjct: 73 VSTTPERLTKPYEETDTPI-PTHSSPSTSTSTSTSTSTSTSTSRSTSTVTPTTRSSTTTT 131
Query: 135 GLSAPMSGSTSGTTSA 88
S P S S + TTSA
Sbjct: 132 ATSTPTSSSKATTTSA 147
>AL117195-5|CAB55012.1| 732|Caenorhabditis elegans Hypothetical
protein Y57A10A.7 protein.
Length = 732
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 202 FHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDN 95
F+R ++ G YY+ R + + PN + KWDN
Sbjct: 29 FNRFAELDGAGLSHIYYYIRFHEHIAPN--IAKWDN 62
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 27.5 bits (58), Expect = 3.2
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Frame = -3
Query: 303 PEMIKSPADLKTAPFDPRFPNQNQTRHCYQVT----WTSTVARKFAAKNTNHATISRECT 136
P +++ AP +P P + + + +T + +K + +H+ + ++
Sbjct: 652 PPVLRPAFSESKAPQEPSKPVETKENNKPALTDDFPLPEPLPQKPKIETNHHSAVEKDAE 711
Query: 135 GLSAPMSGSTSGTTSAPKAPSPVGFRS*TFPML 37
+ ++ AP APSP F FP L
Sbjct: 712 KIKVRSPPVVVASSPAPAAPSPFSFEETAFPSL 744
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 27.5 bits (58), Expect = 3.2
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Frame = -3
Query: 303 PEMIKSPADLKTAPFDPRFPNQNQTRHCYQVT----WTSTVARKFAAKNTNHATISRECT 136
P +++ AP +P P + + + +T + +K + +H+ + ++
Sbjct: 554 PPVLRPAFSESKAPQEPSKPVETKENNKPALTDDFPLPEPLPQKPKIETNHHSAVEKDAE 613
Query: 135 GLSAPMSGSTSGTTSAPKAPSPVGFRS*TFPML 37
+ ++ AP APSP F FP L
Sbjct: 614 KIKVRSPPVVVASSPAPAAPSPFSFEETAFPSL 646
>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 1 SFDLIKTNRNKLKHWERLGSKSYRRRCLRRAGCPTCRPTHWG 126
+ D++ +KL+ + RR CLR C PT +G
Sbjct: 140 ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 181
>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 1 SFDLIKTNRNKLKHWERLGSKSYRRRCLRRAGCPTCRPTHWG 126
+ D++ +KL+ + RR CLR C PT +G
Sbjct: 181 ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 222
>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 1 SFDLIKTNRNKLKHWERLGSKSYRRRCLRRAGCPTCRPTHWG 126
+ D++ +KL+ + RR CLR C PT +G
Sbjct: 140 ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 181
>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 1 SFDLIKTNRNKLKHWERLGSKSYRRRCLRRAGCPTCRPTHWG 126
+ D++ +KL+ + RR CLR C PT +G
Sbjct: 181 ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 222
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -3
Query: 195 VARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFR 58
+A+K A A S+ + +SAP + + + T+SAP A +P R
Sbjct: 394 IAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAP-ATAPEASR 438
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 156 TISRECTGLSAPMSGSTSGTTSAPKAPSP 70
+++ E T S SGS+ GT S +PSP
Sbjct: 451 SVATEVTSQSTVPSGSSLGTQSTNSSPSP 479
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 156 TISRECTGLSAPMSGSTSGTTSAPKAPSP 70
+++ E T S SGS+ GT S +PSP
Sbjct: 658 SVATEVTSQSTVPSGSSLGTQSTNSSPSP 686
>AF000263-15|AAG00018.1| 416|Caenorhabditis elegans Hypothetical
protein T08B2.11 protein.
Length = 416
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 156 TISRECTGLSAPMSGSTSGTTSAPKA 79
T ++ + LSA + G TSG APKA
Sbjct: 101 THRKKKSSLSASLEGKTSGENEAPKA 126
>AC006627-10|AAK85465.1| 499|Caenorhabditis elegans Hypothetical
protein E01A2.8 protein.
Length = 499
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 127 CPNEWVDKWDNQRAEGTFAGRI*ILNVPNALIYFDLF 17
C + D N +++G AG+ N PN + F+ F
Sbjct: 51 CSSSLNDNQQNTKSDGITAGKSTTQNTPNETVNFNFF 87
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 25.8 bits (54), Expect = 9.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +1
Query: 97 CPTCRPTHWGRETC 138
C C+P HWG C
Sbjct: 2018 CDRCKPDHWGFSKC 2031
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 25.8 bits (54), Expect = 9.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +1
Query: 97 CPTCRPTHWGRETC 138
C C+P HWG C
Sbjct: 2018 CDRCKPDHWGFSKC 2031
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 25.8 bits (54), Expect = 9.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +1
Query: 97 CPTCRPTHWGRETC 138
C C+P HWG C
Sbjct: 2018 CDRCKPDHWGFSKC 2031
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 25.8 bits (54), Expect = 9.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +1
Query: 97 CPTCRPTHWGRETC 138
C C+P HWG C
Sbjct: 2018 CDRCKPDHWGFSKC 2031
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,048,687
Number of Sequences: 27780
Number of extensions: 194440
Number of successful extensions: 660
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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