Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d18
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    27   2.1  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    26   4.9  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.9  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   8.6  

>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 394 NNNSFLRLHLKSLSNMIKYFLXTTQLYSEH 483
           N+  FLRLHL+S++   ++      LY +H
Sbjct: 78  NDYEFLRLHLQSITKYDEFMNKLWNLYQKH 107


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 497 LILN*CSLYNCVVXKKYFIMFDRDFKCKRKNELLXVFIKYLQ 372
           LI+  CSL++ V  K+Y I   ++   K K +L  +   YL+
Sbjct: 70  LIVGPCSLHDPVAAKEYAIRLQKE-AIKHKKDLHIIMRAYLE 110


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 137 NKNNNTIKCMQKYIYSCKVNFSNDNIXYENIN*LPILQTKIY 12
           N  NN +   Q   YS   NF N++    N N L  LQ + +
Sbjct: 230 NTTNNRVSSFQNSQYSTLNNFQNNSNQSPNSNDLQPLQAEAF 271


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 280 VIGKCVASLFFKNNLSHVSLVIAITVFMTCTFE 182
           + G C+  +FF NNL+++ L +A+ +     FE
Sbjct: 55  ITGDCINRIFFPNNLANL-LPVAVLLSPENAFE 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,647
Number of Sequences: 5004
Number of extensions: 40896
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)