Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d18
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0379 + 33505242-33505347,33505474-33505631,33506127-335061...    30   1.3  
04_03_0394 - 15340726-15341990,15342091-15342186,15342278-15342302     27   8.9  
04_03_0333 + 14569377-14569401,14569493-14569588,14569689-14570953     27   8.9  

>03_06_0379 +
           33505242-33505347,33505474-33505631,33506127-33506174,
           33506851-33506919
          Length = 126

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 361 LTQHCKYFINTNNNSFLRLHLKSLSNMI-KYFLXTTQLYS-EH*FNIK 498
           L+   ++F+N   N   RLH++++S+ + KY L    LY  +H  +IK
Sbjct: 5   LSAFSQWFVNPRRNPLARLHMQAISSRLRKYGLRYDDLYDPKHDLDIK 52


>04_03_0394 - 15340726-15341990,15342091-15342186,15342278-15342302
          Length = 461

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 9   HIYFCLQDWKSVDVLIXNVIVTKVNLTAVNIFLHTF 116
           HIYF   DWK  D  + ++   K+   AV +    F
Sbjct: 409 HIYFVPDDWKPYDTFVYSMRDGKMRSFAVKLLASDF 444


>04_03_0333 + 14569377-14569401,14569493-14569588,14569689-14570953
          Length = 461

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 9   HIYFCLQDWKSVDVLIXNVIVTKVNLTAVNIFLHTF 116
           HIYF   DWK  D  + ++   K+   AV +    F
Sbjct: 409 HIYFVPDDWKPYDTFVYSMRDGKMRSFAVKLLASEF 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,551,603
Number of Sequences: 37544
Number of extensions: 194833
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)