Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d18
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical p...    28   6.0  
AL132862-29|CAI79284.1|  109|Caenorhabditis elegans Hypothetical...    28   6.0  
U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF040655-2|AAB95042.2|  306|Caenorhabditis elegans Serpentine re...    27   8.0  

>Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 13  YIFVCKIGSQLMFSYXMXXXXXXXXXXXIYFCIHFIVLLFLFPDXSXFVL 162
           Y  +  +GS L   Y +           + FC+ F ++LF+ P+   F+L
Sbjct: 162 YSSMTMVGSFLGQDYIIGSHLFWLCFFVVPFCLFFTLILFILPETPKFLL 211


>Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 13  YIFVCKIGSQLMFSYXMXXXXXXXXXXXIYFCIHFIVLLFLFPDXSXFVL 162
           Y  +  +GS L   Y +           + FC+ F ++LF+ P+   F+L
Sbjct: 162 YSSMTMVGSFLGQDYIIGSHLFWLCFFVVPFCLFFTLILFILPETPKFLL 211


>AL132862-29|CAI79284.1|  109|Caenorhabditis elegans Hypothetical
           protein Y73F8A.36 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 191 YF*TQC-RLIKSTKXEXSGNKNNNTIKCMQK 102
           +F T+C R +   K   S +KN  TI+C+QK
Sbjct: 66  FFETRCPRKVACLKVNKSTHKNPKTIRCLQK 96


>U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical
           protein F10G7.6 protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 349 ITQHLTQHCKYFINTNNNSFLRLHLKSLSNM 441
           I  HL +   Y   TN+++FLR H  S+ N+
Sbjct: 138 ILSHLVRRPPYIPTTNSSNFLRRHDVSVGNL 168


>AF040655-2|AAB95042.2|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein111 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 298 CNNDFAVIGKCVASLFFKNNLSHVSLVIAITV 203
           C  D+  +   V SLFF+N  +H  L+  +T+
Sbjct: 228 CFEDWVYVLDTVNSLFFRNTANHPFLIFIVTL 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,512,633
Number of Sequences: 27780
Number of extensions: 233061
Number of successful extensions: 395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)