Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d17
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    28   1.3  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   9.3  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   9.3  

>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = -2

Query: 533 TTRGAAVTSHRTL*EHTAIPLRLSY*CI*C--IMKDDI--FYKASQLISSI*TDIAVEFV 366
           T RGAA++      EHT +P++ S   +    I+ ++I   Y+ + L +    D A +  
Sbjct: 394 TVRGAAISVLSAFEEHTTLPIQQSLREMSATYILNNEINWIYQEALLYACCSVDAASDDT 453

Query: 365 FDDVSEPV 342
           +DD  +P+
Sbjct: 454 YDDYLDPI 461


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 68  SGEQSPGLRRVRRPQ*ISTLCTGV---HTRDRSPHNNLFKKL 184
           S   +PGLR +++   +STL T V     +  SPH  +  K+
Sbjct: 266 SSPNTPGLRNLQKKSALSTLLTAVVSERNKLNSPHPPVLVKI 307


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 87  GCGASAGRNKYQPYVQESTHATDPLIITSLKNYNLFRYVLSMKVSP-PQPAPSRGGAASL 263
           G G SAG  K +PY   +    +  I+ S+ +    R    MK+ P  +P PS+    S 
Sbjct: 339 GFGNSAGVEKNKPYALRTDEVDNDRILPSVLSPR-DRVNPVMKIGPETKPVPSK---LST 394

Query: 264 AETAFHKSTSSGV 302
           A  A  KST   +
Sbjct: 395 ALHAARKSTDGSL 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,326
Number of Sequences: 5004
Number of extensions: 35584
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)