Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d17
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0651 - 19714348-19714395,19715319-19715429,19715503-197155... 29 4.2
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 5.5
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 28 5.5
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315... 28 5.5
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 7.3
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974... 28 7.3
05_07_0303 - 29093045-29093176,29093332-29093451,29093570-290939... 28 7.3
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163... 27 9.7
>08_02_0651 -
19714348-19714395,19715319-19715429,19715503-19715572,
19716081-19716178,19716272-19716319,19716391-19716446,
19718191-19718314,19718417-19718506
Length = 214
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 66 GLVSRVQ-GCGASAGRNKYQPYVQESTHATDPLIITSLKNYNLFRYVLSMKVSPPQ 230
G V R++ G++K+ +++ ++ + NY LF + L + + PP+
Sbjct: 78 GTVKRLRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAIVPPE 133
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 132 QESTHATDPLIITSLKNYNLFRYVLSMKVSPPQPAPSRGGAASLA 266
Q S + +PL++T LK N+ + + PP P+ + A++L+
Sbjct: 875 QPSDNQNNPLVVTQLKLANIEKRAPRVPRPPPAPSATANTASALS 919
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 207 SMKVSPPQPAPSRGGAAS 260
S K +PPQP P RGG A+
Sbjct: 812 SDKEAPPQPVPGRGGGAT 829
>08_01_0359 +
3152483-3152857,3154493-3154855,3155133-3155211,
3155473-3155879,3156342-3156497,3156728-3156895,
3156991-3157131,3157739-3157966,3158063-3158176,
3158293-3158448
Length = 728
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 219 SPPQPAPSRGGAASLAETAFHKSTSSG 299
+PP P P GGAA HK T+ G
Sbjct: 33 APPTPEPEAGGAAVAVAGVLHKWTNYG 59
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 132 QESTHATDPLIITSLKNYNLFRYVLSMKVSPPQPAPSRGGAASL 263
Q S + +PL++T LK N+ + + PP P+ + A++L
Sbjct: 570 QPSDNQNNPLVVTQLKLANIEKRAPRVPRPPPAPSATANTASAL 613
>09_06_0061 + 20596360-20596618,20597039-20597158,20597329-20597462,
20597578-20597730,20597816-20597927,20598022-20598352,
20598524-20598737,20598842-20598931,20599669-20599924,
20600029-20600141,20600733-20600831,20600915-20600980,
20601018-20601167,20601278-20601368,20601710-20601749,
20603888-20605247,20605478-20605507,20605834-20605885,
20606264-20606397,20606513-20606665,20607089-20607202
Length = 1356
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 345 WLADVIEYKFHCNISSDRRN*LT-SFIENIIFHYTLDTLV 461
W A + +YK C I + +R T S + I+F YT ++
Sbjct: 1311 WSASLYDYKISCAIDASKRTHNTVSNLNEILFSYTYKNIL 1350
>05_07_0303 -
29093045-29093176,29093332-29093451,29093570-29093985,
29094163-29094208
Length = 237
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 152 CRVCGLLYIRLIFIAAGGRAATLDSAHQTDTHIYIKFTVSCF 27
CR+ G+L + L+F+AA A L AH D I T+ F
Sbjct: 101 CRMLGVLTVELVFLAAVA-AGVLLGAHTYDKRSLIVGTLCVF 141
>06_01_0213 +
1628974-1629339,1629441-1629590,1630935-1631095,
1631178-1631892,1632045-1632091,1632295-1632316
Length = 486
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 198 YVLSMKVSPPQPAPSRGGAASLAETAFHKSTSSGV 302
Y+ + SPP P S A++ A + H+S S G+
Sbjct: 34 YIKRNRASPPPPPGSPTAASAAAVSPIHRSLSRGL 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,501,192
Number of Sequences: 37544
Number of extensions: 240766
Number of successful extensions: 830
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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