Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d17
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    29   2.1  
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    28   6.5  
AF023454-1|AAB82794.1|  707|Caenorhabditis elegans protein phosp...    27   8.6  
AF003389-11|AAC71139.2|  707|Caenorhabditis elegans Phosphatase ...    27   8.6  

>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore
           complex protein protein12 protein.
          Length = 1847

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -3

Query: 403 FLLSELILQWNLYSMTSASQSVSQGDCKRISVS*TPLEVDL*NAVSASDAAPPREGAGCG 224
           F+   L L      +TS    V   DC+ I       +  L    S++D++ P  G GCG
Sbjct: 533 FVGDTLTLNIKATGLTSDGLLVEMSDCRNIRAHVQITDNALLRHESSADSSLPMMGTGCG 592

Query: 223 GETF 212
             TF
Sbjct: 593 TITF 596


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 53  KYVYRSGEQSPGLRRVRRPQ*ISTLCTGVHTRDRS 157
           +++ RSG ++P  R  RR +  S   +G H+R RS
Sbjct: 317 RHLSRSGSRTPAQRHSRRSESTSRRRSGRHSRSRS 351


>AF023454-1|AAB82794.1|  707|Caenorhabditis elegans protein
           phosphatase with EF-hands protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 87  GCGASAGRNKYQPYVQESTHATDPLIITSLK-NYN 188
           GCG S+GR      +++ST AT     +S + NYN
Sbjct: 2   GCGPSSGRQNPSTELKKSTRATTTTTSSSQRNNYN 36


>AF003389-11|AAC71139.2|  707|Caenorhabditis elegans Phosphatase
           with ef hands protein1, isoform a protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 87  GCGASAGRNKYQPYVQESTHATDPLIITSLK-NYN 188
           GCG S+GR      +++ST AT     +S + NYN
Sbjct: 2   GCGPSSGRQNPSTELKKSTRATTTTTSSSQRNNYN 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,543,827
Number of Sequences: 27780
Number of extensions: 206530
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)