Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d17
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   5.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 162 IITSLKNYNLFRYVLSMKVSPPQPAP 239
           +  +L  Y L   VL    +PP+PAP
Sbjct: 318 VFMALMEYCLVNIVLGDSDTPPKPAP 343


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 53  KYVYRSGEQSPGLR---RVRRPQ*ISTLCTGVHTRDRSPHNNLFKKL 184
           KY   S E+S   R   R + P+ IS+L    +  +   +NN +KKL
Sbjct: 280 KYRETSKERSRDRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKL 326


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -1

Query: 531 DARRRRDVTPNVMRTYSNTSKTVLLMYLMYNER*YFL 421
           D + + ++ P+ +++YS + +      L  N   YFL
Sbjct: 396 DFQNKNNLIPSALQSYSTSMRDPAFYMLYQNILSYFL 432


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 351 ADVIEYKFHCNISSDRRN*LTSFIENI 431
           +D+ +YK  CN+ + +   L   +E+I
Sbjct: 195 SDIEKYKMFCNLENVKLKELRIILEDI 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,729
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)