Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d14
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    28   1.2  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.7  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   6.3  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   6.3  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   6.3  

>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 285 ILLRQRNFRKKGYKVFASRINI*IIHKKFYTF 190
           ILL + NF KKGY+  +S ++  +  KKF  F
Sbjct: 161 ILLTKFNFEKKGYQNLSSALDTILHIKKFSKF 192


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 260 RKLR*RRSMKFSTLIESIEKKCTMP 334
           RKL  +RS KFS+++ S + +C  P
Sbjct: 141 RKLIPKRSAKFSSMVGSSDTRCNSP 165


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 266 IFVKRDTKFLLHVLIYRLFIKSSIHLFVLIATSSEDLCINWTKL 135
           IF+K  TK   H  I + F+K  + L   +A SS    ++  +L
Sbjct: 141 IFMKHATKHSCHFNILKCFLKLLMSLSAKLAVSSNSSTVSSLEL 184


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 491 PYSILNLTTDVKNKSLTINSMHACVRQIH 405
           PY +LN+T  V N  L+ +     V Q+H
Sbjct: 111 PYGMLNITLKVFNTMLSFDKAAEYVTQLH 139


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -2

Query: 297 VENFILLRQRNFRKKGYKVFASRINI*IIHKKFYTFICVNSDI*RRFMYQLD*IERHLKN 118
           + N+I++  + FR+    VF  R +  I +K +Y F+   +   R+   +L     +  N
Sbjct: 147 IRNYIVVTIKMFRQAFVDVFPIRKHRLIANKNYYLFLFKFN---RKLALELQRAYINTMN 203

Query: 117 YFYL 106
           +FYL
Sbjct: 204 WFYL 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,349
Number of Sequences: 5004
Number of extensions: 46943
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)