Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d14
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi... 29 3.3
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota... 29 3.3
AL023816-1|CAA19430.2| 250|Caenorhabditis elegans Hypothetical ... 28 4.4
Z92796-6|CAB63232.1| 405|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z79754-1|CAB02090.1| 457|Caenorhabditis elegans Hypothetical pr... 28 5.8
U80842-2|AAB37948.1| 322|Caenorhabditis elegans Serpentine rece... 28 5.8
Z75543-13|CAI79192.1| 281|Caenorhabditis elegans Hypothetical p... 27 7.7
Z75543-12|CAA99874.4| 280|Caenorhabditis elegans Hypothetical p... 27 7.7
U23179-2|AAK68207.1| 345|Caenorhabditis elegans Serpentine rece... 27 7.7
AY728061-1|AAU43722.1| 281|Caenorhabditis elegans cadmium-induc... 27 7.7
>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
protein F08B12.3c protein.
Length = 1086
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = -3
Query: 383 FLY*FNVSFMHYFKKILASCTSSLYSL*VWKISYSSVSAIFVKRDTKFLLHVL-----IY 219
+L + F +F + + +C S +Y++ V+ +SYS S + + + FLL ++ I
Sbjct: 93 YLLWVDFDFKIWFLQTMFACISMVYTILVFYLSYSG-SVVRLLINIHFLLELITSFPFII 151
Query: 218 RLFIKSSIHLFV 183
+FI S +L+V
Sbjct: 152 SIFIPSLTYLYV 163
>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
protein F08B12.3b protein.
Length = 1107
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = -3
Query: 383 FLY*FNVSFMHYFKKILASCTSSLYSL*VWKISYSSVSAIFVKRDTKFLLHVL-----IY 219
+L + F +F + + +C S +Y++ V+ +SYS S + + + FLL ++ I
Sbjct: 114 YLLWVDFDFKIWFLQTMFACISMVYTILVFYLSYSG-SVVRLLINIHFLLELITSFPFII 172
Query: 218 RLFIKSSIHLFV 183
+FI S +L+V
Sbjct: 173 SIFIPSLTYLYV 184
>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
protein F08B12.3a protein.
Length = 1119
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = -3
Query: 383 FLY*FNVSFMHYFKKILASCTSSLYSL*VWKISYSSVSAIFVKRDTKFLLHVL-----IY 219
+L + F +F + + +C S +Y++ V+ +SYS S + + + FLL ++ I
Sbjct: 114 YLLWVDFDFKIWFLQTMFACISMVYTILVFYLSYSG-SVVRLLINIHFLLELITSFPFII 172
Query: 218 RLFIKSSIHLFV 183
+FI S +L+V
Sbjct: 173 SIFIPSLTYLYV 184
>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
channel protein.
Length = 1107
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = -3
Query: 383 FLY*FNVSFMHYFKKILASCTSSLYSL*VWKISYSSVSAIFVKRDTKFLLHVL-----IY 219
+L + F +F + + +C S +Y++ V+ +SYS S + + + FLL ++ I
Sbjct: 114 YLLWVDFDFKIWFLQTMFACISMVYTILVFYLSYSG-SVVRLLINIHFLLELITSFPFII 172
Query: 218 RLFIKSSIHLFV 183
+FI S +L+V
Sbjct: 173 SIFIPSLTYLYV 184
>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
potassium channel Slo-2 protein.
Length = 1119
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = -3
Query: 383 FLY*FNVSFMHYFKKILASCTSSLYSL*VWKISYSSVSAIFVKRDTKFLLHVL-----IY 219
+L + F +F + + +C S +Y++ V+ +SYS S + + + FLL ++ I
Sbjct: 114 YLLWVDFDFKIWFLQTMFACISMVYTILVFYLSYSG-SVVRLLINIHFLLELITSFPFII 172
Query: 218 RLFIKSSIHLFV 183
+FI S +L+V
Sbjct: 173 SIFIPSLTYLYV 184
>AL023816-1|CAA19430.2| 250|Caenorhabditis elegans Hypothetical
protein T05G11.2 protein.
Length = 250
Score = 28.3 bits (60), Expect = 4.4
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = -3
Query: 386 CFLY*FNVSFMHYFKKILASCTSSL-YSL*VWKISYSSVSAIFVKRDTKFLLHVLIYRLF 210
CF+ F + + YFK+I + L YS + Y+ S + V T L+ L L
Sbjct: 20 CFINYFILFSIFYFKRIPVNPNMILIYSRFGIDVIYTYSSFMVV---TYILIMTLSTNLR 76
Query: 209 IKSSIHLFVLIATSSEDLCINWTKLSAI*RIIST 108
IK+ I LFV TS + + L I R+I+T
Sbjct: 77 IKNLIFLFVWTTTSIKTMRSILAFLITIERVIAT 110
>Z92796-6|CAB63232.1| 405|Caenorhabditis elegans Hypothetical
protein H25K10.7 protein.
Length = 405
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = -1
Query: 421 VCVKYTVCSVYNVFFIDLMYLLCIILKKYWHRALLLYTLYKCGKFH 284
+ + T+ +Y +F + ++L I+ W+ + T +C KFH
Sbjct: 70 IMIGITLSDLYTMFHVVYVFLDNIVSNYNWYECFQVCTEQECFKFH 115
>Z79754-1|CAB02090.1| 457|Caenorhabditis elegans Hypothetical
protein F25H2.1 protein.
Length = 457
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 321 FFSILSISVENFILLRQRNFRKKGYKVFASRINI 220
FF + + ++ + R FRK+ YKV RIN+
Sbjct: 225 FFQLKYLPIKRITHCQPRRFRKQLYKVIIFRINV 258
>U80842-2|AAB37948.1| 322|Caenorhabditis elegans Serpentine
receptor, class i protein51 protein.
Length = 322
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 269 AIFVKRDTKFLLHVLIYRLFIKSSIHLFVLIATSS 165
A + D + ++ ++I ++ SIH +LIAT+S
Sbjct: 263 AFWATGDLRTIIEIIIVLFLLRGSIHSVILIATTS 297
>Z75543-13|CAI79192.1| 281|Caenorhabditis elegans Hypothetical
protein K01D12.13b protein.
Length = 281
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 358 LCIILKKYWHRALLLYTLYKCGKFHTPPS 272
+C K + A +Y +YK KF TPP+
Sbjct: 3 ICAHSKLIFASAAAIYAVYKINKFFTPPT 31
>Z75543-12|CAA99874.4| 280|Caenorhabditis elegans Hypothetical
protein K01D12.13a protein.
Length = 280
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 358 LCIILKKYWHRALLLYTLYKCGKFHTPPS 272
+C K + A +Y +YK KF TPP+
Sbjct: 3 ICAHSKLIFASAAAIYAVYKINKFFTPPT 31
>U23179-2|AAK68207.1| 345|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 5 protein.
Length = 345
Score = 27.5 bits (58), Expect = 7.7
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = -3
Query: 563 DCILYFYNHKFRQDYAIKKINKDKPYSILNLTTDVK-NKSLTINSMHACVRQIHGM*CV* 387
+C+L ++ +F+ Y KK + Y++ ++ K LT + G V
Sbjct: 204 NCVLLIFHKRFKNTYLKKKTSLSVRYALEEISNSSKFTLILTFTHLVFFGAYTIGSILVR 263
Query: 386 CFLY*FNVSFMHYFKKILASCTSSLYSL*VWKISYSSVSAIFVKRDTKFLLHVLI 222
F +F++++ +C Y+L + + S+ + +R K L VLI
Sbjct: 264 TLGESFFGNFLNFYVARGVNCAVPTYNLLIAFVGLISLRQLNSRRHAKILTKVLI 318
>AY728061-1|AAU43722.1| 281|Caenorhabditis elegans
cadmium-inducible lysosomal proteinCDR-7 protein.
Length = 281
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 358 LCIILKKYWHRALLLYTLYKCGKFHTPPS 272
+C K + A +Y +YK KF TPP+
Sbjct: 3 ICAHSKLIFASAAAIYAVYKINKFFTPPT 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,435,185
Number of Sequences: 27780
Number of extensions: 253923
Number of successful extensions: 650
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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