Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d13
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   3.7  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   3.7  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   8.6  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   8.6  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -2

Query: 318 YYINYMQVLHCTILFLAMLTFFINKYCYLNYLFILF*HSVIFTKNAKLFTFNINIKGNLL 139
           Y   Y  +  C IL +A  ++F +  C+++ +  L     I  K+   F  +   K +  
Sbjct: 259 YLRRYPSIESCIILLMAYTSYFFSNGCHMSGVVSLL-FCGITLKHYAFFNMSYKAKLSTK 317

Query: 138 YVYLQYFKLI-IFHFVY 91
           YV+    +L   F F+Y
Sbjct: 318 YVFRVLAQLSENFIFIY 334


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 185  MLNFSHSTLILKAIYCMSTY 126
            MLNF  STL LK  +C S +
Sbjct: 1200 MLNFISSTLYLKVSFCSSNF 1219


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 95 YIKIVMQLLFSISFALHIFHLLFEK 21
          ++ I+  +LFSI+F LH+  L F +
Sbjct: 14 WVTILAVILFSIAFILHVACLAFTR 38


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 168 FNINIKGNLLYVYLQYFKLIIFHFVY*DSNAI 73
           F+IN   +LL  Y QY++++++ F+Y +S  +
Sbjct: 37  FHINFGLHLLSHY-QYWRILLWQFIYWNSTEV 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,111
Number of Sequences: 5004
Number of extensions: 42866
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)