Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d13
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-13|AAF60926.1|  342|Caenorhabditis elegans Seven tm rec...    28   4.6  
U97008-8|AAB52306.2|  307|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AC024882-13|AAF60926.1|  342|Caenorhabditis elegans Seven tm
           receptor protein 164 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 27/90 (30%), Positives = 40/90 (44%)
 Frame = -2

Query: 303 MQVLHCTILFLAMLTFFINKYCYLNYLFILF*HSVIFTKNAKLFTFNINIKGNLLYVYLQ 124
           M  L  TI+F AM+T   +  CY  YL      S+I  +    FT N+ I+   LY  L 
Sbjct: 199 MSTLIATIVFTAMITSSFSVVCYYGYLSYKRITSLI-DEGQSEFTRNLQIQ---LYKALV 254

Query: 123 YFKLIIFHFVY*DSNAIAILDIFCSAHLSP 34
              +I    +Y    +  +L  F   ++SP
Sbjct: 255 VQAIIPIVLMYLPVGSYLVLPAF-GINISP 283


>U97008-8|AAB52306.2|  307|Caenorhabditis elegans Hypothetical
           protein C03G6.6 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 291 HCTILFLAMLTFFINKYCYLNYLF 220
           +CTI FL  LTF+I+ Y  L+Y +
Sbjct: 3   NCTIFFLLALTFYIS-YIILSYYY 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,439
Number of Sequences: 27780
Number of extensions: 237705
Number of successful extensions: 434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)