Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d12
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   7.0  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    25   9.3  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    25   9.3  

>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 76  HIIPQGTPYILIPFIVXLXTIRH 8
           H +P G PY  +P +  +  IRH
Sbjct: 222 HEMPLGKPYFNMPLLTMIKGIRH 244


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 350 INPKSTFYYMKFHF 309
           +N K  FYY K+HF
Sbjct: 209 VNDKGEFYYCKWHF 222


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 85  IFIHIIPQGTPYILIPFIVXLXTIRHI 5
           +F   +P GTP  LIP +V +  + +I
Sbjct: 149 VFGLFLPSGTPTPLIPLLVLIEFVSYI 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,172
Number of Sequences: 5004
Number of extensions: 24186
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)