Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d11
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    41   1e-04
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    32   0.089
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    28   1.1  
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    26   4.4  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    26   4.4  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.7  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   7.7  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   7.7  

>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
 Frame = -2

Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEF-----KISCFMP 517
           VE +SF+AH D     + I      +++LVHGE   M  LK  +  +F      +  + P
Sbjct: 413 VEELSFAAHVDYLQNSEFIDLVNADHIILVHGEQTNMGRLKSALASKFHNRKVDVKVYTP 472

Query: 516 ANGETCVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDID 337
            N   CV   P  +P     RL++A           PK   +++GIL  KD    L+  +
Sbjct: 473 RN---CV---PLYLPFK-GERLVRALG---KVAVHKPKEGDIMSGILIQKDANYKLMSAE 522

Query: 336 EMCD 325
           ++ D
Sbjct: 523 DLRD 526


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 561 KDKIEKEFKISCFMPANGETCVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPK 403
           K+K+E+   +S   P++G + V+NTPT  P       L    +RY  QP DP+
Sbjct: 262 KNKVEEAI-VSSSAPSSGVSSVLNTPTR-P-----HALSTPRIRYGPQPTDPQ 307


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/56 (19%), Positives = 33/56 (58%)
 Frame = -2

Query: 252 KTAEKLQNLLTEKLEGWTITISEGNISVESVLIKVEGEDDSTKNIYVSWTNQDEDL 85
           K  ++L N L ++++ + + +SE N +++    K++ ++++   +  ++  +D DL
Sbjct: 541 KEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVMNAFQYKDNDL 596


>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 438 AVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCD 325
           A+    +PP  K      G+LC+ + RL  +  D  CD
Sbjct: 32  AISILCKPPSLKSWTCTKGLLCLTNQRLVYIAKDTDCD 69


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 411 DPKRRRVVNGILCVKDNRLSL-LDIDEMCDEIGINRHIIRFTSTVRFEDPGPAIKTAEKL 235
           +P  RRV N I+CV+  RL L  DI+ +     I+ H+    S+ + +   P   T+E  
Sbjct: 85  NPSCRRVPNSIVCVRGVRLPLKSDIEAVKSPKAIS-HLEEKKSSPKEKKVNPFAITSESS 143

Query: 234 QNL 226
           + L
Sbjct: 144 RGL 146


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 264 GPAIKTAEKLQNLLTEKLEGWTITISEGNISVESVLI 154
           G  I     L  ++ + LE W+ T++  N+SV + L+
Sbjct: 258 GMVIMMISILPRIVYQFLETWSFTLNASNVSVNAGLV 294


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 390 QLACVLDQVVGHCISLL 440
           QLAC+  QV+ HC+S L
Sbjct: 614 QLACLNPQVLSHCLSHL 630


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
            Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +1

Query: 472  RNGCW----SIYNTCFTISWH-KTTNFEFLLYFIFQKLHFLSFTMYQQYIFGFTILYQLH 636
            RN  W    + Y+  F I+     TN    L ++ + +  LS   + Q + GFT LY+ +
Sbjct: 853  RNRSWIPAINYYSRAFAINPDCPITNLSLGLAYLHRAMQRLSDNRHYQILQGFTFLYRYY 912

Query: 637  N 639
            +
Sbjct: 913  D 913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,270
Number of Sequences: 5004
Number of extensions: 59834
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)