Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d11
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377... 79 2e-15
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 51 1e-06
09_06_0344 - 22419152-22419250,22419460-22419554,22419952-224201... 40 0.002
01_05_0542 + 23086931-23087014,23087116-23087206,23087624-230876... 29 3.4
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 28 6.0
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 28 6.0
06_03_1189 + 28271185-28271394,28272421-28273326 28 6.0
>09_04_0020 +
13837257-13837281,13837364-13837550,13837655-13837727,
13837769-13837804,13838161-13838281,13838399-13838472,
13838594-13838730,13839262-13839325,13839693-13839758,
13840061-13840130,13840206-13840310,13840840-13840981,
13841343-13841439,13841939-13842460
Length = 572
Score = 79.4 bits (187), Expect = 2e-15
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 14/144 (9%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
+ +SFS H D+KGIM L ++ P +V+LVHGE +M FLK++IE E + C PAN ET
Sbjct: 400 IHQLSFSPHTDSKGIMDLTEFLSPSHVILVHGEKPQMAFLKERIESELGMQCCYPANNET 459
Query: 501 CVINTPTTIPIDVSLRLL------------KAEAVRYNAQPPDPKRRR-VVNGILCVKDN 361
I T + I+ + + + + + + + P R V G+L ++ +
Sbjct: 460 VSIPTSQNLKINATEKFIVSFCMDETENDPQKQNLNFGGDMPQGCRTEGVAEGVLLMEKS 519
Query: 360 RL-SLLDIDEMCDEIGINRHIIRF 292
+ +L DE+ +G+ H + F
Sbjct: 520 KTPKILREDELLHSLGMETHFVHF 543
>03_06_0716 -
35695158-35696795,35697075-35697288,35697290-35697372,
35697695-35697865
Length = 701
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
V Y+SFSAHAD + +P N++LVHGEA +M LK K+ +F + N +
Sbjct: 408 VHYISFSAHADFPQTSTFLDELQPPNIVLVHGEANEMSRLKQKLISQFDGTNIKVVNPKN 467
Query: 501 C 499
C
Sbjct: 468 C 468
>09_06_0344 -
22419152-22419250,22419460-22419554,22419952-22420108,
22420825-22420869,22421080-22421211,22421496-22421594,
22421690-22421785,22421968-22422149,22422242-22422494,
22422867-22422974,22423037-22423094,22423462-22423613,
22423698-22423792,22424172-22424287,22424369-22424495,
22424565-22424661,22424745-22424913,22425879-22426027
Length = 742
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -2
Query: 675 YMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
YM F +D + + +I + P ++LVHG A+ E LK K + + P ET
Sbjct: 543 YMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCSKNSDLHVYAPQIEET 600
>01_05_0542 +
23086931-23087014,23087116-23087206,23087624-23087650,
23087742-23087895,23087958-23088023,23088249-23088292,
23088592-23088683,23088779-23088926,23089356-23089420,
23089495-23089592,23090368-23090392
Length = 297
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
++ +SF AH D + + +P+N+LLV E ++ K + E C +P +
Sbjct: 146 IKQLSFFAHKDMHELRLIHTDLKPENILLVSSEYIRVPGSKKNSQDEMHFKC-LPKSSAI 204
Query: 501 CVINTPTT 478
+I+ +T
Sbjct: 205 KLIDFGST 212
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 474 PIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCV 370
P+ L+A+ VRY + PD R +V+ +LCV
Sbjct: 1719 PLHFDTVKLRAQPVRYPRRWPDFVSRAIVDSVLCV 1753
>07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Frame = -2
Query: 678 EYMSFSAHADAKGIMQLIQYCEPKNV---LLVHGEAQKM----EFLKDKIEKEFKISC 526
EY S A K + +QYC+PK V LL E + + L D++ K FK SC
Sbjct: 1682 EYGSPREDAVKKIFQRALQYCDPKKVHLALLAMYERTEQYTLADELLDRMTKRFKTSC 1739
>06_03_1189 + 28271185-28271394,28272421-28273326
Length = 371
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -2
Query: 576 KMEFLKDKIEKEFKISCFMPANGETCVINTPTTIPID--VSLRLLKAEAVRYNAQPPDPK 403
+ME+++ ++E E + P + +N P + D + + +E A PP K
Sbjct: 261 RMEYMRRELEAEAAAAWSWPGHHVGLDLNLPEPVLCDRGATAGEVLSEEEGDGAPPPAKK 320
Query: 402 RRRVVNGI 379
RRR V G+
Sbjct: 321 RRRAVAGV 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,223,229
Number of Sequences: 37544
Number of extensions: 344534
Number of successful extensions: 811
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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