Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d11
(685 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein. 192 1e-48
BC013904-1|AAH13904.2| 429|Homo sapiens CPSF3L protein protein. 192 1e-48
BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and polyadenyl... 192 1e-48
BC000675-1|AAH00675.2| 473|Homo sapiens CPSF3L protein protein. 192 1e-48
AL139287-8|CAI23179.1| 523|Homo sapiens cleavage and polyadenyl... 192 1e-48
AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and polyadenyl... 192 1e-48
AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and polyadenyl... 192 1e-48
AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and polyadenyl... 192 1e-48
AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens ... 192 1e-48
AK000549-1|BAA91246.1| 292|Homo sapiens protein ( Homo sapiens ... 186 5e-47
BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein. 66 8e-11
BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein. 66 8e-11
AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and polyadenyl... 66 8e-11
BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and polyadenyl... 48 3e-05
BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and polyadenyl... 48 3e-05
AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and polyadenyl... 48 3e-05
AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and polyadenyl... 48 3e-05
AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein. 48 3e-05
AK123641-1|BAC85668.1| 125|Homo sapiens protein ( Homo sapiens ... 46 1e-04
AF017269-1|AAB70268.1| 379|Homo sapiens 73 kDA subunit of cleav... 46 1e-04
AY462871-1|AAS58865.1| 712|Homo sapiens POTE2A protein. 37 0.058
EF523384-1|ABP57734.1| 1075|Homo sapiens POTE-2 alpha-actin prot... 36 0.10
BX538020-1|CAD97966.1| 1510|Homo sapiens hypothetical protein pr... 31 3.8
AK126937-1|BAC86755.1| 1127|Homo sapiens protein ( Homo sapiens ... 31 3.8
AB023164-1|BAA76791.3| 2330|Homo sapiens KIAA0947 protein protein. 31 3.8
>CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein.
Length = 600
Score = 192 bits (468), Expect = 1e-48
Identities = 98/218 (44%), Positives = 145/218 (66%), Gaps = 3/218 (1%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
VEYMSFSAHADAKGIMQL+ EP++VLLVHGEA+KMEFLK KIE+E +++C+MPANGET
Sbjct: 384 VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGET 443
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
+ T +IP+ +SL LLK E + P+ K+ R+++G L +KD+ L+ ++ E
Sbjct: 444 VTLPTSPSIPVGISLGLLKREMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKE 501
Query: 321 IGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEGNISVESVLIK-- 151
+G+ H +RFT V D +TA ++ + L L+ + + +G+++VESVL++
Sbjct: 502 LGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDGSVTVESVLLQAA 561
Query: 150 VEGEDDSTKNIYVSWTNQDEDLGSYILGLLQSMVQYSP 37
ED TK + VSWT QDE+LGS++ LL+ + +P
Sbjct: 562 APSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAP 599
>BC013904-1|AAH13904.2| 429|Homo sapiens CPSF3L protein protein.
Length = 429
Score = 192 bits (468), Expect = 1e-48
Identities = 98/218 (44%), Positives = 145/218 (66%), Gaps = 3/218 (1%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
VEYMSFSAHADAKGIMQL+ EP++VLLVHGEA+KMEFLK KIE+E +++C+MPANGET
Sbjct: 213 VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGET 272
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
+ T +IP+ +SL LLK E + P+ K+ R+++G L +KD+ L+ ++ E
Sbjct: 273 VTLPTSPSIPVGISLGLLKREMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKE 330
Query: 321 IGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEGNISVESVLIK-- 151
+G+ H +RFT V D +TA ++ + L L+ + + +G+++VESVL++
Sbjct: 331 LGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDGSVTVESVLLQAA 390
Query: 150 VEGEDDSTKNIYVSWTNQDEDLGSYILGLLQSMVQYSP 37
ED TK + VSWT QDE+LGS++ LL+ + +P
Sbjct: 391 APSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAP 428
>BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and polyadenylation
specific factor 3-like protein.
Length = 600
Score = 192 bits (468), Expect = 1e-48
Identities = 98/218 (44%), Positives = 145/218 (66%), Gaps = 3/218 (1%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
VEYMSFSAHADAKGIMQL+ EP++VLLVHGEA+KMEFLK KIE+E +++C+MPANGET
Sbjct: 384 VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGET 443
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
+ T +IP+ +SL LLK E + P+ K+ R+++G L +KD+ L+ ++ E
Sbjct: 444 VTLPTSPSIPVGISLGLLKREMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKE 501
Query: 321 IGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEGNISVESVLIK-- 151
+G+ H +RFT V D +TA ++ + L L+ + + +G+++VESVL++
Sbjct: 502 LGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDGSVTVESVLLQAA 561
Query: 150 VEGEDDSTKNIYVSWTNQDEDLGSYILGLLQSMVQYSP 37
ED TK + VSWT QDE+LGS++ LL+ + +P
Sbjct: 562 APSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAP 599
>BC000675-1|AAH00675.2| 473|Homo sapiens CPSF3L protein protein.
Length = 473
Score = 192 bits (468), Expect = 1e-48
Identities = 98/218 (44%), Positives = 145/218 (66%), Gaps = 3/218 (1%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
VEYMSFSAHADAKGIMQL+ EP++VLLVHGEA+KMEFLK KIE+E +++C+MPANGET
Sbjct: 257 VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGET 316
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
+ T +IP+ +SL LLK E + P+ K+ R+++G L +KD+ L+ ++ E
Sbjct: 317 VTLPTSPSIPVGISLGLLKREMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKE 374
Query: 321 IGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEGNISVESVLIK-- 151
+G+ H +RFT V D +TA ++ + L L+ + + +G+++VESVL++
Sbjct: 375 LGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDGSVTVESVLLQAA 434
Query: 150 VEGEDDSTKNIYVSWTNQDEDLGSYILGLLQSMVQYSP 37
ED TK + VSWT QDE+LGS++ LL+ + +P
Sbjct: 435 APSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAP 472
>AL139287-8|CAI23179.1| 523|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 523
Score = 192 bits (468), Expect = 1e-48
Identities = 98/218 (44%), Positives = 145/218 (66%), Gaps = 3/218 (1%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
VEYMSFSAHADAKGIMQL+ EP++VLLVHGEA+KMEFLK KIE+E +++C+MPANGET
Sbjct: 307 VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGET 366
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
+ T +IP+ +SL LLK E + P+ K+ R+++G L +KD+ L+ ++ E
Sbjct: 367 VTLPTSPSIPVGISLGLLKREMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKE 424
Query: 321 IGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEGNISVESVLIK-- 151
+G+ H +RFT V D +TA ++ + L L+ + + +G+++VESVL++
Sbjct: 425 LGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDGSVTVESVLLQAA 484
Query: 150 VEGEDDSTKNIYVSWTNQDEDLGSYILGLLQSMVQYSP 37
ED TK + VSWT QDE+LGS++ LL+ + +P
Sbjct: 485 APSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAP 522
>AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 514
Score = 192 bits (468), Expect = 1e-48
Identities = 98/218 (44%), Positives = 145/218 (66%), Gaps = 3/218 (1%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
VEYMSFSAHADAKGIMQL+ EP++VLLVHGEA+KMEFLK KIE+E +++C+MPANGET
Sbjct: 298 VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGET 357
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
+ T +IP+ +SL LLK E + P+ K+ R+++G L +KD+ L+ ++ E
Sbjct: 358 VTLPTSPSIPVGISLGLLKREMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKE 415
Query: 321 IGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEGNISVESVLIK-- 151
+G+ H +RFT V D +TA ++ + L L+ + + +G+++VESVL++
Sbjct: 416 LGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDGSVTVESVLLQAA 475
Query: 150 VEGEDDSTKNIYVSWTNQDEDLGSYILGLLQSMVQYSP 37
ED TK + VSWT QDE+LGS++ LL+ + +P
Sbjct: 476 APSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAP 513
>AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and polyadenylation
specific factor 3-like protein.
Length = 627
Score = 192 bits (468), Expect = 1e-48
Identities = 98/218 (44%), Positives = 145/218 (66%), Gaps = 3/218 (1%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
VEYMSFSAHADAKGIMQL+ EP++VLLVHGEA+KMEFLK KIE+E +++C+MPANGET
Sbjct: 411 VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGET 470
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
+ T +IP+ +SL LLK E + P+ K+ R+++G L +KD+ L+ ++ E
Sbjct: 471 VTLPTSPSIPVGISLGLLKREMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKE 528
Query: 321 IGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEGNISVESVLIK-- 151
+G+ H +RFT V D +TA ++ + L L+ + + +G+++VESVL++
Sbjct: 529 LGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDGSVTVESVLLQAA 588
Query: 150 VEGEDDSTKNIYVSWTNQDEDLGSYILGLLQSMVQYSP 37
ED TK + VSWT QDE+LGS++ LL+ + +P
Sbjct: 589 APSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAP 626
>AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and polyadenylation
specific factor 3-like protein.
Length = 598
Score = 192 bits (468), Expect = 1e-48
Identities = 98/218 (44%), Positives = 145/218 (66%), Gaps = 3/218 (1%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
VEYMSFSAHADAKGIMQL+ EP++VLLVHGEA+KMEFLK KIE+E +++C+MPANGET
Sbjct: 382 VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGET 441
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
+ T +IP+ +SL LLK E + P+ K+ R+++G L +KD+ L+ ++ E
Sbjct: 442 VTLPTSPSIPVGISLGLLKREMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKE 499
Query: 321 IGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEGNISVESVLIK-- 151
+G+ H +RFT V D +TA ++ + L L+ + + +G+++VESVL++
Sbjct: 500 LGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDGSVTVESVLLQAA 559
Query: 150 VEGEDDSTKNIYVSWTNQDEDLGSYILGLLQSMVQYSP 37
ED TK + VSWT QDE+LGS++ LL+ + +P
Sbjct: 560 APSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAP 597
>AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ11877 fis, clone HEMBA1007087, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 499
Score = 192 bits (468), Expect = 1e-48
Identities = 98/218 (44%), Positives = 145/218 (66%), Gaps = 3/218 (1%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
VEYMSFSAHADAKGIMQL+ EP++VLLVHGEA+KMEFLK KIE+E +++C+MPANGET
Sbjct: 283 VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGET 342
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
+ T +IP+ +SL LLK E + P+ K+ R+++G L +KD+ L+ ++ E
Sbjct: 343 VTLPTSPSIPVGISLGLLKREMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKE 400
Query: 321 IGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEGNISVESVLIK-- 151
+G+ H +RFT V D +TA ++ + L L+ + + +G+++VESVL++
Sbjct: 401 LGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDGSVTVESVLLQAA 460
Query: 150 VEGEDDSTKNIYVSWTNQDEDLGSYILGLLQSMVQYSP 37
ED TK + VSWT QDE+LGS++ LL+ + +P
Sbjct: 461 APSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAP 498
>AK000549-1|BAA91246.1| 292|Homo sapiens protein ( Homo sapiens
cDNA FLJ20542 fis, clone KAT11395. ).
Length = 292
Score = 186 bits (454), Expect = 5e-47
Identities = 95/205 (46%), Positives = 138/205 (67%), Gaps = 3/205 (1%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
VEYMSFSAHADAKGIMQL+ EP++VLLVHGEA+KMEFLK KIE+E +++C+MPANGET
Sbjct: 86 VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVNCYMPANGET 145
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
+ T +IP+ +SL LLK E + P+ K+ R+++G L +KD+ L+ ++ E
Sbjct: 146 VTLPTSPSIPVGISLGLLKREMAQ--GLLPEAKKPRLLHGTLIMKDSNFRLVSSEQALKE 203
Query: 321 IGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEGNISVESVLIK-- 151
+G+ H +RFT V D +TA ++ + L L+ + + +G+++VESVL++
Sbjct: 204 LGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDGSVTVESVLLQAA 263
Query: 150 VEGEDDSTKNIYVSWTNQDEDLGSY 76
ED TK + VSWT QDE+LGS+
Sbjct: 264 APSEDPGTKVLLVSWTYQDEELGSF 288
>BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 66.5 bits (155), Expect = 8e-11
Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Frame = -2
Query: 357 LSLLDIDEMCDEIGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEG 181
+ L+ ++ E+G+ H +RFT V D +TA ++ + L L+ + + +G
Sbjct: 279 MQLVSSEQALKELGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDG 338
Query: 180 NISVESVLIKVEG--EDDSTKNIYVSWTNQDEDLGSYILGLLQSMVQYSP 37
+++VESVL++ ED TK + VSWT QDE+LGS++ LL+ + +P
Sbjct: 339 SVTVESVLLQAAAPSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAP 388
Score = 41.5 bits (93), Expect = 0.003
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLI 625
VEYMSFSAHADAKGIMQL+
Sbjct: 264 VEYMSFSAHADAKGIMQLV 282
>BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 66.5 bits (155), Expect = 8e-11
Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Frame = -2
Query: 357 LSLLDIDEMCDEIGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEG 181
+ L+ ++ E+G+ H +RFT V D +TA ++ + L L+ + + +G
Sbjct: 279 MQLVSSEQALKELGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDG 338
Query: 180 NISVESVLIKVEG--EDDSTKNIYVSWTNQDEDLGSYILGLLQSMVQYSP 37
+++VESVL++ ED TK + VSWT QDE+LGS++ LL+ + +P
Sbjct: 339 SVTVESVLLQAAAPSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAP 388
Score = 41.5 bits (93), Expect = 0.003
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLI 625
VEYMSFSAHADAKGIMQL+
Sbjct: 264 VEYMSFSAHADAKGIMQLV 282
>AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 401
Score = 66.5 bits (155), Expect = 8e-11
Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Frame = -2
Query: 357 LSLLDIDEMCDEIGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTIT-ISEG 181
+ L+ ++ E+G+ H +RFT V D +TA ++ + L L+ + + +G
Sbjct: 291 MQLVSSEQALKELGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKDHCVQHLPDG 350
Query: 180 NISVESVLIKVEG--EDDSTKNIYVSWTNQDEDLGSYILGLLQSMVQYSP 37
+++VESVL++ ED TK + VSWT QDE+LGS++ LL+ + +P
Sbjct: 351 SVTVESVLLQAAAPSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAP 400
Score = 41.5 bits (93), Expect = 0.003
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLI 625
VEYMSFSAHADAKGIMQL+
Sbjct: 276 VEYMSFSAHADAKGIMQLV 294
>BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 48.0 bits (109), Expect = 3e-05
Identities = 34/139 (24%), Positives = 67/139 (48%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
V+Y+SFSAH D + + I+ +P +V+LVHGE +M LK + +E++ + +
Sbjct: 388 VDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIE--- 444
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
V N T + ++ R K V P++ + V+GIL ++ +L ++ +
Sbjct: 445 -VHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNY 503
Query: 321 IGINRHIIRFTSTVRFEDP 265
+ ++ T + + P
Sbjct: 504 TDLAMSTVKQTQAIPYTGP 522
>BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 48.0 bits (109), Expect = 3e-05
Identities = 34/139 (24%), Positives = 67/139 (48%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
V+Y+SFSAH D + + I+ +P +V+LVHGE +M LK + +E++ + +
Sbjct: 388 VDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIE--- 444
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
V N T + ++ R K V P++ + V+GIL ++ +L ++ +
Sbjct: 445 -VHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNY 503
Query: 321 IGINRHIIRFTSTVRFEDP 265
+ ++ T + + P
Sbjct: 504 TDLAMSTVKQTQAIPYTGP 522
>AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa variant
protein.
Length = 684
Score = 48.0 bits (109), Expect = 3e-05
Identities = 34/139 (24%), Positives = 67/139 (48%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
V+Y+SFSAH D + + I+ +P +V+LVHGE +M LK + +E++ + +
Sbjct: 388 VDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIE--- 444
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
V N T + ++ R K V P++ + V+GIL ++ +L ++ +
Sbjct: 445 -VHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNY 503
Query: 321 IGINRHIIRFTSTVRFEDP 265
+ ++ T + + P
Sbjct: 504 TDLAMSTVKQTQAIPYTGP 522
>AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and
polyadenylation specificity factor 73 kDa subunit
protein.
Length = 684
Score = 48.0 bits (109), Expect = 3e-05
Identities = 34/139 (24%), Positives = 67/139 (48%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
V+Y+SFSAH D + + I+ +P +V+LVHGE +M LK + +E++ + +
Sbjct: 388 VDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIE--- 444
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
V N T + ++ R K V P++ + V+GIL ++ +L ++ +
Sbjct: 445 -VHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNY 503
Query: 321 IGINRHIIRFTSTVRFEDP 265
+ ++ T + + P
Sbjct: 504 TDLAMSTVKQTQAIPYTGP 522
>AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein.
Length = 684
Score = 48.0 bits (109), Expect = 3e-05
Identities = 34/139 (24%), Positives = 67/139 (48%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
V+Y+SFSAH D + + I+ +P +V+LVHGE +M LK + +E++ + +
Sbjct: 388 VDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIE--- 444
Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
V N T + ++ R K V P++ + V+GIL ++ +L ++ +
Sbjct: 445 -VHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNY 503
Query: 321 IGINRHIIRFTSTVRFEDP 265
+ ++ T + + P
Sbjct: 504 TDLAMSTVKQTQAIPYTGP 522
>AK123641-1|BAC85668.1| 125|Homo sapiens protein ( Homo sapiens
cDNA FLJ41647 fis, clone FEBRA2024136. ).
Length = 125
Score = 46.0 bits (104), Expect = 1e-04
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = -2
Query: 522 MPANGETCVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDN 361
MPANGET + T +IP+ +SL LLK E + P+ K+ R+++G L +KD+
Sbjct: 1 MPANGETVTLPTSPSIPVGISLGLLKREMAQ--GLLPEAKKPRLLHGTLIMKDS 52
>AF017269-1|AAB70268.1| 379|Homo sapiens 73 kDA subunit of cleavage
and polyadenylation specificity factor protein.
Length = 379
Score = 46.0 bits (104), Expect = 1e-04
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Frame = -2
Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFK------ISCFM 520
V+Y+SFSAH D + + I+ +P +V+LVHGE +M LK + +E++ I
Sbjct: 269 VDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHN 328
Query: 519 PANGETCVIN 490
P N E +N
Sbjct: 329 PRNTEAVTLN 338
>AY462871-1|AAS58865.1| 712|Homo sapiens POTE2A protein.
Length = 712
Score = 37.1 bits (82), Expect = 0.058
Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Frame = -2
Query: 657 HADAKGIMQLIQYCEPKNVLLVHGE----AQKMEFLKDKIEKEFKISCFMPANGETCVIN 490
H+D + Q Q+CE +N ++H E +K + +K+ E +SC E V++
Sbjct: 592 HSDEQNDTQK-QFCEEQNTGILHDEILIHEEKQIEVVEKMNSELSLSC----KKEKDVLH 646
Query: 489 TPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEM 331
+T+ ++++ L+ + +++ +Q + K + + DN L L ++E+
Sbjct: 647 ENSTLREEIAMLRLELDTMKHQSQLREKKYLEDIESVKKKNDNLLKALQLNEL 699
>EF523384-1|ABP57734.1| 1075|Homo sapiens POTE-2 alpha-actin
protein.
Length = 1075
Score = 36.3 bits (80), Expect = 0.10
Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Frame = -2
Query: 657 HADAKGIMQLIQYCEPKNVLLVHGE----AQKMEFLKDKIEKEFKISCFMPANGETCVIN 490
H+D + Q Q+CE +N ++H E +K + +K+ E +SC E +++
Sbjct: 592 HSDEQNDTQK-QFCEEQNTGILHDEILIHEEKQIEVVEKMNSELSLSC----KKEKDILH 646
Query: 489 TPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEM 331
+T+ ++++ L+ + +++ +Q + K + + DN L L ++E+
Sbjct: 647 ENSTLREEIAMLRLELDTMKHQSQLREKKYLEDIESVKKRNDNLLKALQLNEL 699
>BX538020-1|CAD97966.1| 1510|Homo sapiens hypothetical protein
protein.
Length = 1510
Score = 31.1 bits (67), Expect = 3.8
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -2
Query: 240 KLQNLLTEKLEGWTITISEGNISVESVLIKVEGE-DDSTKNI 118
KL++L ++E +T + GN + S + K +GE DD+T+NI
Sbjct: 118 KLEHLRPHRVEPTLVTENSGNKTGMSTIAKCDGERDDTTQNI 159
>AK126937-1|BAC86755.1| 1127|Homo sapiens protein ( Homo sapiens
cDNA FLJ44990 fis, clone BRAWH3008559. ).
Length = 1127
Score = 31.1 bits (67), Expect = 3.8
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -2
Query: 240 KLQNLLTEKLEGWTITISEGNISVESVLIKVEGE-DDSTKNI 118
KL++L ++E +T + GN + S + K +GE DD+T+NI
Sbjct: 874 KLEHLRPHRVEPTLVTENSGNKTGMSTIAKCDGERDDTTQNI 915
>AB023164-1|BAA76791.3| 2330|Homo sapiens KIAA0947 protein protein.
Length = 2330
Score = 31.1 bits (67), Expect = 3.8
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -2
Query: 240 KLQNLLTEKLEGWTITISEGNISVESVLIKVEGE-DDSTKNI 118
KL++L ++E +T + GN + S + K +GE DD+T+NI
Sbjct: 938 KLEHLRPHRVEPTLVTENSGNKTGMSTIAKCDGERDDTTQNI 979
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,841,311
Number of Sequences: 237096
Number of extensions: 1997359
Number of successful extensions: 3646
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3612
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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