Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d11
         (685 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061097-1|AAL28645.1|  597|Drosophila melanogaster LD08814p pro...   298   5e-81
AE014297-4430|AAF56931.1|  597|Drosophila melanogaster CG1972-PA...   298   5e-81
AY119128-1|AAM50988.1|  684|Drosophila melanogaster RE31408p pro...    51   2e-06
AE014297-2556|AAF55578.2|  684|Drosophila melanogaster CG7698-PA...    51   2e-06
AF160933-1|AAD46873.1|  756|Drosophila melanogaster LD14168p pro...    36   0.052
AE014297-4305|AAN14148.1|  664|Drosophila melanogaster CG1957-PB...    36   0.052
AE014297-4304|AAF56844.1|  756|Drosophila melanogaster CG1957-PA...    36   0.052
AY075566-1|AAL68373.2|  204|Drosophila melanogaster SD01117p pro...    32   0.84 
AE013599-3495|AAF46921.1|  203|Drosophila melanogaster CG3501-PA...    32   0.84 
BT023836-1|AAZ86757.1| 1199|Drosophila melanogaster LD18215p pro...    29   7.8  
BT011109-1|AAR82776.1| 1190|Drosophila melanogaster LD47325p pro...    29   7.8  
AY071668-1|AAL49290.1|  485|Drosophila melanogaster RH02365p pro...    29   7.8  
AY058541-1|AAL13770.1|  664|Drosophila melanogaster LD24308p pro...    29   7.8  
AE014298-1094|AAS65275.1|  646|Drosophila melanogaster CG2206-PB...    29   7.8  
AE014298-1093|AAF46301.1|  664|Drosophila melanogaster CG2206-PA...    29   7.8  
AE014296-709|AAF47805.3|  485|Drosophila melanogaster CG14980-PB...    29   7.8  
AE013599-1009|AAF58849.1| 1199|Drosophila melanogaster CG1371-PA...    29   7.8  

>AY061097-1|AAL28645.1|  597|Drosophila melanogaster LD08814p protein.
          Length = 597

 Score =  298 bits (731), Expect = 5e-81
 Identities = 137/213 (64%), Positives = 175/213 (82%), Gaps = 3/213 (1%)
 Frame = -2

Query: 681  VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
            VEYMSFSAHADAKGIMQLIQ CEPKNV+LVHGEA KM+FL+ KI+ EF +  +MPANGET
Sbjct: 384  VEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAGKMKFLRSKIKDEFNLETYMPANGET 443

Query: 501  CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
            CVI+TP  IP+D S+ LLKAEA  YNAQPPDPKRRR+++G+L +KDNR+ L ++ +   E
Sbjct: 444  CVISTPVKIPVDASVSLLKAEARSYNAQPPDPKRRRLIHGVLVMKDNRIMLQNLTDALKE 503

Query: 321  IGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTITISE-GNISVESVLIKVE 145
            IGINRH++RFTS V+ +D GP I+T+E+L+ LL EKL GWT+T+ E G+I++ESV +KVE
Sbjct: 504  IGINRHVMRFTSKVKMDDSGPVIRTSERLKTLLEEKLAGWTVTMQENGSIAIESVEVKVE 563

Query: 144  GE--DDSTKNIYVSWTNQDEDLGSYILGLLQSM 52
             +  D   KNI +SWTNQDED+G+YIL +LQ+M
Sbjct: 564  EDEKDPKQKNILISWTNQDEDIGAYILNVLQNM 596


>AE014297-4430|AAF56931.1|  597|Drosophila melanogaster CG1972-PA
            protein.
          Length = 597

 Score =  298 bits (731), Expect = 5e-81
 Identities = 137/213 (64%), Positives = 175/213 (82%), Gaps = 3/213 (1%)
 Frame = -2

Query: 681  VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
            VEYMSFSAHADAKGIMQLIQ CEPKNV+LVHGEA KM+FL+ KI+ EF +  +MPANGET
Sbjct: 384  VEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAGKMKFLRSKIKDEFNLETYMPANGET 443

Query: 501  CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
            CVI+TP  IP+D S+ LLKAEA  YNAQPPDPKRRR+++G+L +KDNR+ L ++ +   E
Sbjct: 444  CVISTPVKIPVDASVSLLKAEARSYNAQPPDPKRRRLIHGVLVMKDNRIMLQNLTDALKE 503

Query: 321  IGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTITISE-GNISVESVLIKVE 145
            IGINRH++RFTS V+ +D GP I+T+E+L+ LL EKL GWT+T+ E G+I++ESV +KVE
Sbjct: 504  IGINRHVMRFTSKVKMDDSGPVIRTSERLKTLLEEKLAGWTVTMQENGSIAIESVEVKVE 563

Query: 144  GE--DDSTKNIYVSWTNQDEDLGSYILGLLQSM 52
             +  D   KNI +SWTNQDED+G+YIL +LQ+M
Sbjct: 564  EDEKDPKQKNILISWTNQDEDIGAYILNVLQNM 596


>AY119128-1|AAM50988.1|  684|Drosophila melanogaster RE31408p
           protein.
          Length = 684

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 32/112 (28%), Positives = 58/112 (51%)
 Frame = -2

Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
           V+Y+SFSAH D +   + I+  +P +V+LVHGE  +M  LK  +++E++      A+ + 
Sbjct: 394 VDYISFSAHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRLKLALQREYEAD----ASTDI 449

Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLL 346
              N   T  +D+  R  K   V  +    + +    ++G+L  +D +  LL
Sbjct: 450 KFYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVKRDFKYHLL 501


>AE014297-2556|AAF55578.2|  684|Drosophila melanogaster CG7698-PA
           protein.
          Length = 684

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 32/112 (28%), Positives = 58/112 (51%)
 Frame = -2

Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
           V+Y+SFSAH D +   + I+  +P +V+LVHGE  +M  LK  +++E++      A+ + 
Sbjct: 394 VDYISFSAHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRLKLALQREYEAD----ASTDI 449

Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLL 346
              N   T  +D+  R  K   V  +    + +    ++G+L  +D +  LL
Sbjct: 450 KFYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVKRDFKYHLL 501


>AF160933-1|AAD46873.1|  756|Drosophila melanogaster LD14168p
           protein.
          Length = 756

 Score = 35.9 bits (79), Expect = 0.052
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = -2

Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGE 505
           V+ + F   +D + +++++    P+ V+++HG A+  + +    E+      F P  GE
Sbjct: 546 VQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGARVFTPQKGE 604


>AE014297-4305|AAN14148.1|  664|Drosophila melanogaster CG1957-PB,
           isoform B protein.
          Length = 664

 Score = 35.9 bits (79), Expect = 0.052
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = -2

Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGE 505
           V+ + F   +D + +++++    P+ V+++HG A+  + +    E+      F P  GE
Sbjct: 454 VQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGARVFTPQKGE 512


>AE014297-4304|AAF56844.1|  756|Drosophila melanogaster CG1957-PA,
           isoform A protein.
          Length = 756

 Score = 35.9 bits (79), Expect = 0.052
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = -2

Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGE 505
           V+ + F   +D + +++++    P+ V+++HG A+  + +    E+      F P  GE
Sbjct: 546 VQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGARVFTPQKGE 604


>AY075566-1|AAL68373.2|  204|Drosophila melanogaster SD01117p
           protein.
          Length = 204

 Score = 31.9 bits (69), Expect = 0.84
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFM 520
           V  M   AHA+ +G++    Y  P+N      +      + DKI++ FK +CF+
Sbjct: 63  VALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAKIADKIQENFKNACFV 116


>AE013599-3495|AAF46921.1|  203|Drosophila melanogaster CG3501-PA
           protein.
          Length = 203

 Score = 31.9 bits (69), Expect = 0.84
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFM 520
           V  M   AHA+ +G++    Y  P+N      +      + DKI++ FK +CF+
Sbjct: 62  VALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAKIADKIQENFKNACFV 115


>BT023836-1|AAZ86757.1| 1199|Drosophila melanogaster LD18215p
           protein.
          Length = 1199

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
 Frame = -2

Query: 216 KLEGWTIT----ISEGNISVESVLIKVEGEDDSTKNIYVSWTNQDEDLGSYILGLLQSMV 49
           K+ G+T++     S G   ++S +IKV G+  +  +   S+T ++   G+  + +  S +
Sbjct: 314 KITGFTVSGRVLTSAGGEPLKSAVIKVNGKKVAETDAQGSYTLENLKAGTVNIEVESSQL 373

Query: 48  QYSPMK 31
           Q+SP++
Sbjct: 374 QFSPLQ 379


>BT011109-1|AAR82776.1| 1190|Drosophila melanogaster LD47325p
           protein.
          Length = 1190

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
 Frame = -2

Query: 216 KLEGWTIT----ISEGNISVESVLIKVEGEDDSTKNIYVSWTNQDEDLGSYILGLLQSMV 49
           K+ G+T++     S G   ++S +IKV G+  +  +   S+T ++   G+  + +  S +
Sbjct: 305 KITGFTVSGRVLTSAGGEPLKSAVIKVNGKKVAETDAQGSYTLENLKAGTVNIEVESSQL 364

Query: 48  QYSPMK 31
           Q+SP++
Sbjct: 365 QFSPLQ 370


>AY071668-1|AAL49290.1|  485|Drosophila melanogaster RH02365p
           protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 348 LDIDEMCDEIGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTITI 190
           ++++    ++G++  IIRFT T   ED   A+ T +  Q     +   W + +
Sbjct: 41  IELNTKIKDVGLSEAIIRFTGTFTSEDDCQALHTQKTTQLFYQPEPGYWLVLV 93


>AY058541-1|AAL13770.1|  664|Drosophila melanogaster LD24308p
           protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 411 DPKRRRVVNGILCVKDNRLSLLDIDE 334
           D KR RVV G+  VK NR+  L I E
Sbjct: 433 DVKRNRVVTGLRFVKQNRIFHLQIQE 458


>AE014298-1094|AAS65275.1|  646|Drosophila melanogaster CG2206-PB,
           isoform B protein.
          Length = 646

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 411 DPKRRRVVNGILCVKDNRLSLLDIDE 334
           D KR RVV G+  VK NR+  L I E
Sbjct: 415 DVKRNRVVTGLRFVKQNRIFHLQIQE 440


>AE014298-1093|AAF46301.1|  664|Drosophila melanogaster CG2206-PA,
           isoform A protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 411 DPKRRRVVNGILCVKDNRLSLLDIDE 334
           D KR RVV G+  VK NR+  L I E
Sbjct: 433 DVKRNRVVTGLRFVKQNRIFHLQIQE 458


>AE014296-709|AAF47805.3|  485|Drosophila melanogaster CG14980-PB
           protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 348 LDIDEMCDEIGINRHIIRFTSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTITI 190
           ++++    ++G++  IIRFT T   ED   A+ T +  Q     +   W + +
Sbjct: 41  IELNTKIKDVGLSEAIIRFTGTFTSEDDCQALHTQKTTQLFYQPEPGYWLVLV 93


>AE013599-1009|AAF58849.1| 1199|Drosophila melanogaster CG1371-PA
           protein.
          Length = 1199

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
 Frame = -2

Query: 216 KLEGWTIT----ISEGNISVESVLIKVEGEDDSTKNIYVSWTNQDEDLGSYILGLLQSMV 49
           K+ G+T++     S G   ++S +IKV G+  +  +   S+T ++   G+  + +  S +
Sbjct: 314 KITGFTVSGRVLTSAGGEPLKSAVIKVNGKKVAETDAQGSYTLENLKAGTVNIEVESSQL 373

Query: 48  QYSPMK 31
           Q+SP++
Sbjct: 374 QFSPLQ 379


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,816,098
Number of Sequences: 53049
Number of extensions: 622017
Number of successful extensions: 1621
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)