Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d11
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical pr...   110   8e-25
AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical ...    46   3e-05
Z11115-15|CAA77456.1|  316|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF047658-5|AAC04416.3|  434|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical
           protein F10B5.8 protein.
          Length = 608

 Score =  110 bits (265), Expect = 8e-25
 Identities = 58/121 (47%), Positives = 78/121 (64%)
 Frame = -2

Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
           VEYMSFSAHADAKGIMQLI+ CEP++V+ VHGEA KMEFLK K+EKE+K+   MPANGET
Sbjct: 388 VEYMSFSAHADAKGIMQLIRQCEPQHVMFVHGEASKMEFLKGKVEKEYKVPVHMPANGET 447

Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDNRLSLLDIDEMCDE 322
            VI+    + I V L  +   ++  +  P   +   V   +   ++ RL+++   E  D 
Sbjct: 448 VVISAQPKLDIRVPLEKID-RSLSLDPNPAKSECPFVAELVYDQENERLNIMSTAESEDL 506

Query: 321 I 319
           I
Sbjct: 507 I 507


>AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical
           protein Y67H2A.1 protein.
          Length = 707

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 33/107 (30%), Positives = 51/107 (47%)
 Frame = -2

Query: 681 VEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGET 502
           V Y+SFSAH D       ++  +P +++LVHGE  +M  LK  IE++F+       N   
Sbjct: 389 VGYVSFSAHTDYHQTSNFVKALKPPHLVLVHGELHEMSRLKSGIERQFQ-----DDNIPI 443

Query: 501 CVINTPTTIPIDVSLRLLKAEAVRYNAQPPDPKRRRVVNGILCVKDN 361
            V N   T  + +  R  K   V        P+    ++G+L VK+N
Sbjct: 444 EVHNPRNTERLQLQFRGEKTAKVIGKLAQRVPENNETISGVL-VKNN 489


>Z11115-15|CAA77456.1|  316|Caenorhabditis elegans Hypothetical
           protein ZK637.11 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -2

Query: 675 YMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEFLKDKIEKEFKISCFMPANGETCV 496
           Y +F A        Q +Q CEP N +++  +  K E  K +  K+         +  T V
Sbjct: 230 YKNFYAFTRGLEKEQRVQLCEPDNYVIMFDDRYKAELRKHQFHKKNVSKPMKKWSSTTSV 289

Query: 495 INTPTT 478
           I+  TT
Sbjct: 290 ISILTT 295


>Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 415 WLGIVSHCFSFQQPQRDINRNGCWSIYNTC 504
           W+  +S CF+FQ        N  W IY  C
Sbjct: 9   WIMFISKCFAFQFSHYIPPFNESWRIYQLC 38


>Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 415 WLGIVSHCFSFQQPQRDINRNGCWSIYNTC 504
           W+  +S CF+FQ        N  W IY  C
Sbjct: 9   WIMFISKCFAFQFSHYIPPFNESWRIYQLC 38


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
 Frame = -2

Query: 360  RLSLLDIDEMCDEIGINRHIIRF--TSTVRFEDPGPAIKTAEKLQNLLTEKLEGWTITIS 187
            RL+L D  ++ D  G +  ++    T T R+ED GP +K  +K          G  I + 
Sbjct: 1379 RLNLSDQTDLSDLFGSDVPVLTEDGTMTFRWED-GPVLKAIKK----------GEWILLD 1427

Query: 186  EGNISVESVLIKVEGEDDSTKNIYVSWTNQDEDL 85
            E N++ +SVL  +    D  + +Y++  N++ ++
Sbjct: 1428 EMNLASQSVLEGLNACFDHRRVLYIAELNREFEI 1461


>AF047658-5|AAC04416.3|  434|Caenorhabditis elegans Hypothetical
           protein K03H6.5 protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 312 LFRFHHTSHQCLVMIACY 365
           L  +HH SH C+  IAC+
Sbjct: 172 LTSYHHFSHTCITYIACH 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,643,528
Number of Sequences: 27780
Number of extensions: 332313
Number of successful extensions: 908
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)