Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d10
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.5  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   4.4  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   4.4  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    26   4.4  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   4.4  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   7.7  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.7  

>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 378 RKYFKAIRPISTAAVFLYLFI-AKSNHIYKTFRNLLKLRKLTN 503
           R YF  I PI     +L+LF+          F N+LK+ K T+
Sbjct: 488 RSYFMVIEPIFKKICYLWLFLYCPFTPFQILFSNILKMEKGTS 530


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 102 WRHSVPTKVLDKISERKRK 46
           W HSVP ++   +S+R+RK
Sbjct: 603 WIHSVPQEIAYSVSDRERK 621


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 402 PISTAAVFLYLFIAKSNHIYKTFRNLLKLRKLTNCFLKSPAN 527
           PI  +    Y  ++K+NHI   + N L   K   C+   P N
Sbjct: 344 PILLSDSSSYKIVSKNNHILLLYLNALDAPKQLLCYEADPKN 385


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = -3

Query: 363 ISKRCVNETSVRSESFLKSSIA*KLT---KIYMVL---ERLPTFAARGAVPTAYKSELTF 202
           +S   ++ETSV SES + S+I   +T   ++Y      +  P       +PTA     TF
Sbjct: 85  VSSNNIDETSVSSESIITSTITTTITSGSQLYTTTITGQNTPVDTVEVVIPTAG----TF 140

Query: 201 TLSRTLKNSDYP 166
           T + T   S YP
Sbjct: 141 TTTLT-SGSSYP 151


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = -2

Query: 250 CR*GRCTNCIQIR-VNFYAIENVKKLGLPTQ---IPQSNRSICFVGKLKSINQLASLSAN 83
           CR   C N  Q   V F  I N      P +   +     S CF+  L S + L ++S+N
Sbjct: 727 CR-DNCANAFQDNLVGFPTISNPFHANAPPEPHELKLQYHSFCFINNLFSKSSLKAISSN 785

Query: 82  ES 77
           +S
Sbjct: 786 DS 787


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 156 GICVGSPSFLTFSIA*KLT 212
           G C+ S SFLTF++  KLT
Sbjct: 491 GTCIVSVSFLTFTVYAKLT 509


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 330 AHWFRSHTSWILW*CQRKYFKAIRPISTAAVFLYLFIAKSNHIYKTFRNLLKL 488
           AH F     ++ W        A+ P+  AA++  L + K +  Y  F N  KL
Sbjct: 36  AHHFIFRYGFLTWEWTSAIRSALHPLIFAALYRVLQVLKLDSSYFVFTNAPKL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,547
Number of Sequences: 5004
Number of extensions: 59413
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)