Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d10
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0449 + 18025873-18027474                                         33   0.21 
08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957...    29   3.4  
06_03_1159 + 28084786-28085428,28085520-28086166                       29   4.5  
11_04_0369 - 16885918-16886080,16886235-16886671,16886767-168870...    28   6.0  
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572...    28   7.9  

>10_08_0449 + 18025873-18027474
          Length = 533

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +3

Query: 573 VCKVDLRTIVLRDNASF--FTGGRTSC 647
           +CKV+ R I++RDN+ F  F  GR SC
Sbjct: 503 ICKVERRDIIVRDNSRFHHFVNGRCSC 529


>08_02_0582 +
           18993816-18993890,18994050-18994446,18995645-18995748,
           18995863-18996004,18996118-18996237,18996341-18996465,
           18996903-18997061,18997161-18997323,18997420-18997545,
           18997628-18997711,18997761-18998173,18998199-18998273,
           18998463-18998663,18998862-18998971,18999072-18999156,
           18999365-18999493,18999596-18999701,18999825-18999913,
           19000064-19000366
          Length = 1001

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 99  RHSVPTKVLDKISERKRKVF 40
           +HS PT + DK+ +R RKVF
Sbjct: 606 KHSSPTIIPDKVKQRSRKVF 625


>06_03_1159 + 28084786-28085428,28085520-28086166
          Length = 429

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 274 GAGTSAYVCR*GRCTNCIQIRVNFYAIENVKK-LGLPTQIPQSNRSICFVG 125
           GAG S+ +C  G C+ C  IR  F A   +K  +G+ T         C  G
Sbjct: 303 GAGDSSTLCTSGSCSVCRIIRHGFSATREIKDGVGVFTTSTSKRALECIAG 353


>11_04_0369 -
           16885918-16886080,16886235-16886671,16886767-16887028,
           16887050-16887353,16887771-16888166,16888531-16888579,
           16889303-16889737
          Length = 681

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -2

Query: 280 LYGAGTSAYVCR*GRCTNCIQIRVNFYAIENVKKLGLPTQIPQSNRSICFVGKLKSINQL 101
           L G   SA + R   C   +  R+  + I ++  L    Q+    R+IC +G+LKS+N++
Sbjct: 373 LEGFMGSAKLLRHLHCECLLDNRLELHGIHSLINLHTLPQL-YIGRNICNMGELKSLNKI 431

Query: 100 ASLS 89
             L+
Sbjct: 432 KELT 435


>01_06_0707 +
           31355929-31356244,31356766-31356992,31357081-31357257,
           31357355-31357510,31357778-31358054,31358192-31358306,
           31360349-31360634,31361196-31361381,31361663-31361833,
           31362307-31362426
          Length = 676

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 267 ERLPTFAARGAVPTAYKSELTFTLSRTLKNSDYPHRSLNP 148
           ER+   A RG +P        FT  +  K +++PH +  P
Sbjct: 622 ERIIEHAVRGMLPKGRLGRRLFTHLKVYKGAEHPHEAQKP 661


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,901
Number of Sequences: 37544
Number of extensions: 329818
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)