Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d10
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    29   4.1  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    29   4.1  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    29   4.1  
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.        29   4.1  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    29   4.1  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   7.1  

>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
           protein 2, isoform a protein.
          Length = 1538

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 176 EFFNVLDSVKVNSDLYAVGTAPLAANVGRRSSTI 277
           +F+N+LD + V   L+A G A    + G+  +TI
Sbjct: 802 DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTI 835


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
           protein 2, isoform c protein.
          Length = 1926

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 176 EFFNVLDSVKVNSDLYAVGTAPLAANVGRRSSTI 277
           +F+N+LD + V   L+A G A    + G+  +TI
Sbjct: 802 DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTI 835


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 176  EFFNVLDSVKVNSDLYAVGTAPLAANVGRRSSTI 277
            +F+N+LD + V   L+A G A    + G+  +TI
Sbjct: 921  DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTI 954


>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
          Length = 1053

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 176 EFFNVLDSVKVNSDLYAVGTAPLAANVGRRSSTI 277
           +F+N+LD + V   L+A G A    + G+  +TI
Sbjct: 408 DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTI 441


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 176  EFFNVLDSVKVNSDLYAVGTAPLAANVGRRSSTI 277
            +F+N+LD + V   L+A G A    + G+  +TI
Sbjct: 921  DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTI 954


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 199 AIENVKKLGLPTQIPQSNRSICFVGKL-KSINQLASLSANESSG 71
           +IEN+ K   PT +P+S       G++  S+N   +LS NE  G
Sbjct: 671 SIENISKTKTPTTVPKST----ITGRMPSSVNPSDNLSNNEMDG 710


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,259,120
Number of Sequences: 27780
Number of extensions: 325574
Number of successful extensions: 794
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)