Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d09
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    28   1.2  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    26   3.8  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   8.7  

>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 336 FRLVRRGNSYRTETRSHCAATASTRPDSE*GSGDARGNYYRPYLSKNEIYISTSERAI 163
           FR    G+ +R  T S    ++ +   S  GSG+ R N + PYL ++ I    +ER +
Sbjct: 249 FRPEGGGHRHRRSTGSLSVGSSGSGFSSG-GSGNPRKNLFSPYLPQSSIPALLAERRL 305


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 295 CLRPV*ISSPHQSKGERAWCPSRTIPTC 378
           CL  + +S+   +K ++ W  SR +P C
Sbjct: 278 CLERMKVSTRQYAKSQKKWIQSRFLPMC 305


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 240 PNPILSPVALRQWPRNVTVSPSCMNFLSSPV 332
           PN IL+        RN   +PS MNFL+SPV
Sbjct: 469 PNAILTSFNRNFRSRN-DGNPSTMNFLTSPV 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,812
Number of Sequences: 5004
Number of extensions: 52918
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)